RNA id: XR_006252711.1


Basic Information

Item Value
RNA id XR_006252711.1
length 225
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC122359515
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10820111 ~ 10822197 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCACCAACCCGCCGTTTAAAACAACGAGCATCAGCGCTGTCGAGCAGCTTCAGTGACCCCTGCCTGTGTCTGGCGCTCTCCGACGGGGTTTGAGGTAAATCTGTGAGAATGCCACAGTTATGCGGCCTCCTCATCACACTTTTATTTGTTGAGACAGTTGCTGAAAAAAAGTACTGTTGGTACTATGAAGGAGATTATCCTGTGTACTTTGtATGCAAAATAT

Function

GO:

id name namespace
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16293 lncRNA upstream 155001 10663333 ~ 10665110 (+) True lyrm4
TU16295 lncRNA upstream 155998 10663333 ~ 10664113 (+) False lyrm4
XR_006252713.1 lncRNA upstream 251103 10567881 ~ 10569008 (+) True LOC122359526
TU16195 lncRNA upstream 280121 10507334 ~ 10539990 (+) False G10901
TU16191 lncRNA upstream 298401 10507334 ~ 10521710 (+) False G10901
TU16501 lncRNA downstream 74486 10896683 ~ 10897497 (+) True G11106
TU16516 lncRNA downstream 130853 10953050 ~ 10978280 (+) True G11117
TU16523 lncRNA downstream 297690 11119887 ~ 11123114 (+) False LOC122359491
TU16526 lncRNA downstream 309377 11131574 ~ 11132989 (+) False LOC122359491
TU16535 lncRNA downstream 334341 11156538 ~ 11157341 (+) True G11133
XM_043259730.1 mRNA upstream 67301 10748820 ~ 10752810 (+) True si:dkey-24c2.9
XM_043259549.1 mRNA upstream 71770 10742485 ~ 10748341 (+) True gorasp1a
XM_043259452.1 mRNA upstream 78140 10733916 ~ 10741971 (+) True csrnp1a
XM_043259461.1 mRNA upstream 78140 10733919 ~ 10741971 (+) False csrnp1a
XM_043259441.1 mRNA upstream 113892 10703246 ~ 10706219 (+) False slc22a13a
XM_043259653.1 mRNA downstream 86086 10908283 ~ 10917738 (+) True LOC122359360
XM_043259814.1 mRNA downstream 297657 11119854 ~ 11135991 (+) True LOC122359491
XM_043262654.1 mRNA downstream 314904 11137101 ~ 11138828 (+) True LOC122361723
XM_043256326.1 mRNA downstream 407563 11229760 ~ 11264234 (+) True kcnh2a
XM_043261468.1 mRNA downstream 443094 11265291 ~ 11300035 (+) False map4l
TU16308 other upstream 101917 10711130 ~ 10718194 (+) True G10979
XR_006247735.1 other upstream 903250 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 904620 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 1068899 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1648196 9162611 ~ 9171915 (+) False olfm3b
TU16555 other downstream 417929 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 517666 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 674163 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 674163 11496360 ~ 11498937 (+) False mast3a
TU16617 other downstream 680205 11502402 ~ 11505730 (+) False mast3a