RNA id: XM_043259616.1


Basic Information

Item Value
RNA id XM_043259616.1
length 4200
RNA type mRNA
GC content 0.36
exon number 8
gene id rpp40
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10665905 ~ 10671812 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgtttgtgttcaacagaaaatAGAAACTCGGGTTTAGAACAACAAATGAGGACAATTTTAGtttgaactgtccctttaattttAGAGGATTCTTTTGGATTGGTTCCAAATTATGATTTAAGTCCCCTAACAATTACTTAGGATTTTGAAAGAGGTAATTTGGGTAATTTGGCGCCGTGGTTTTCCATACAGAGActataaataactgttatttCACAAATCCGGCCACACTTTAGGGTATTTTAGCTAACCATTACGGCGCAGGATCATTTAAGTTTTTATAAGTCattctagttttattttattttatttgtaggtGTAATATCGTTTGTAGTTATAGTATCAGTTATACTAATATACACTTATTCgttgtttataaaataataaatcggAATAACCACACATTTgctttaattaactttttaactatttatttttattgaagagaataacaaatgtatatacaaaaaagGCACTAACGATTTAAAGTTCTCAAAGGGCACacatttgcaaataatattCCTATCAGGTTTACGAGCCTGCCCGCGAGCAGGAACTGACGTCAAATGTTTGCGACAGAAGTTGGTAGCGGTTTCTAAACATAAAGCCGCATAACCTGGGAGCACAGTCggcttgtttcttttttttgccaggGTGGTGTCATAAAAATGTAGACATTGCGCACAGATATCAAAATGTCTCCAGAGCTGGAAAAGTGCCCGAGAAGCCTGTTGGTATGCGAGAAATCAAACTTCTTGCATGAAAAGTCTCGGCATGACATCCACGTGTCGAAGCACAGCTTTAATTACAAGATCTCAGTGCTCATACCTGAATGCGGGACCCTTCCTGAGAACATCAGAGGTGTCCTCCACAGCTTCAGCCCTTACTATCTAGTGCGGGATCTGCCGGTTTATCAACTGCTGGAAGAAACGTTCCTCGAGTCGCTTGTCAAGAAGGGAAACTTCTACGCGCTTTCCTACAACACCAGAATTGATGAAGATAATGCCATTGCTCTTCTTTCCAGCGgtcagTTAATTTTGTCTCTCGATAAAGACACGTATGAACAGCTTGGCTTGGAGGGACGCCCATCTCTATACAATCACAAAAAAGCCATGAGATTTGTGGTGACTCTGGATCTCACTGATAAAAGCTTGAACCCAGGCACTAAACGATACCAGCGGGTTCTCTCAAGCTTGAAGGACAGACTACCACtcaaatatgactttcttttaacTAAATACAAGACAGGTTCAGATGAAGATCTGACTCTGAACAAGCTGTTGTCCCAGTACTCTTACGAGGAGCACAAGCCTGCTTTAAGCCATCACACCCTGAAAAATATGCCATGTCCCACACTTTACCCATCAGATATACAGGGAAAGACACTGTCATGTGACCCACATCACTTCTTGGAGTGGCTTGGAGCGGTTAACCTAGACATCAGCTGTGAAAATGCTGCTGATAGTTTCGTGTCAACATATGCGTGTCCAGAGCCCCAGAGCTCTGTCAGTCAGGCCCTGCTGTTCACCGTCACTGGCTTCATCTCACCTGagaatgtgtttgtgctgctGCAGGAACTCAGGCAGTATTTCATTGAGCCGAAGTTTACACCATGGATTTCCCTCACTGTGCATGGATTTATGGATAGTCCCGTGTCTTGGGGAACCACAGAACATGGATTCCTCAAAGGGGGTGAAAACTTCtacaattttgtttgttttaagaatCAGGACTACTGGTTACTCATGGCTACCGGTGCTCAAGATGGCTGCCCACCCTAGAAcagtggactttttttttttttttttttcgtctttttttttatgtaaaacacaaatataaatataaaatgtgcactgttgtttcaagtgtttttttattaaattataagaGGACaacagtaagtaaaaaaaaaaagtatataatatcAATTTATTTGGACCAGTCATTTTCACAGCTGTTACATGTTCAGAAACCTAAAAATAATCTTTACAGATTGTACaatttatagcattatttaGTATATCAACTATAAGAAATAAGCCttgccatttttttatatatatatatatgaccagCATTTGAAACTAAAGGCAGATCACATTATGTACAGCTATGCTGAAAGTCAGAAAATGCTGATAATAGATATACTTTTGTCAGTGAAGTGACTGGAACAAAGTTATTTTCCCCAGGAATAGAGTCAGCAATGTTTTACATCAAACTACAACACCCTGTATACAGAATTCAAAAGACATCCATAATGGAGAGAGGGCTGAGCTCAAAGTCTCAAATTTACAAAAAcgaaaaacattttagatatCGCAAAGCtgcattaagaaaataaagacgCGTTTCTGGTTTTGTCTTTCAGGGTTAATAACAGATATCGAATGTTAATTATCACGGATCAAAGTTTCTTTGACAGTCAACGAAGCAGTTTACATACCACAAGTTAAAAGGTATAAGACATTATTAATGTCACAATGCACTTCATAATCAAATATAACCTGTTTTGTAAAAATCTCCAATTAAAGTAAGaactaaaaaaagcattcaataGGTATAAGAGAAATAATCCAAACAATTCTATTTCCAcaatcataaatataatttcgTAAACAagaattaattttacaaaaccaTTTGGGAAAGGAAAAACATACACAACCATCTGTTAATTGATCCATGTTAAGGAACCACTTCAGCGAACTATGGTCAATAAATACtgaatacaattaataataacatacatAAGTTACACATTTTAATCGCTGGGGCCGAGcggattattttttttcctgtaaagtaTTTGTCAAACATACCAATTGTAAGCAAAGGTTTGGAGCTGAATAAGGAATAGTGCATAGATATCTGTACCAGAAACATGCTTTAGCATGAGATTTTGAAAAAAGGAAGCTtcactgcttaaaaaaaaaaaaaaatatggtttttGAGAGGTAGGACTTTAGCACTAAGAAAAAGATAATTTTGCAAAGTcacattttatgcaatttttatgtGGACAGTCTCACAACGCATTTTCTGACTCCATCCCCACccatgttataaaaaaattgtaataagaAATCCGTTCCATTTAATAACAGTGCATACTAGCCAGTCATTACAGATGTTTGGATGGATTTCAGTAGGATCTCCCCTTAGAGATGGTTGTTTATCTCAAGGGCTCTTCTGATGATACAGCAGTCCAAGTCCGTTTGAACCAGCAGAAAAAGAAGGATGCAGATTTAAAAACACCAGCATCCTTTATTGACTTGTGAGGAACATACCTCATTCAATTTCATAATATCATAAGTTATTAAATTAGAGATACTgtgtcaaaaacatttacatcaaAATTATTTGGTGGTATGTTACTCCAAAGCAAACAGTTTGTATGAAACTCTAAGCAGAAAACTTTAAATGTTAACTTTGATACAAATAACTGATTTCCTACTAAGCCAGAGCCTTGCAAATCCATAAGTATTCATTTTGTTGACTTGATCGTTATGTAAATCAGAAATTCAATTAGTAGTCTGTGTAACAGCACTGATGCTAGATCTTTAAGCACTGGTGTCATTTTTTGTTATCGCCAGTGTCTGTTTTTCTTGATATAACCATCAATTCATAAAAGTGACTTTAAAGGGCTGGCTGATGTAAATGCCGGCAGGATTTGCTTGAATATTCACGATGATCAAGGCTTTctgtttgctgaataaaaagtaCCTACTGAAGAAAAGACTGCTAAAGACTTGATACTAATTACAATCTGTTAGTGTAACGATATCCAAAATGAGCAAAATTCAACTCAAGTCTCATGCATCCCTTTCTTAAATTACACTATTATCCATCTTTTCTCAATCGGTCTGCATAGGTGGTGCTTCGAAAAGTAGCCCAAATCTGTATAAACCTCTATGACAAAAAGCAATTCATTACTTGATACAACAGAAATTGAGCAGAAAGATGACAGGAATTGACATATATTGGCATTCTGTCCTTCTGCGCAGTGCAAGATTCATCACAAACTTTGCATTGAAGTCATTATCAAGTGTAGCAGAATGAGTCGCAGCTTTCTGCAAtctaaagaaaatgaaatacgTCCTGGACGAAGATGAAGTGCGAGGTTTGACCACGCCAGTCTTCCACTGTTCCATGAAAAtcctactaaaaaaaaaaaaaaaaaaaaaaaaaaaggaacca

Function

GO: NA

KEGG:

id description
K14530 RPP40; ribonucleases P/MRP protein subunit RPP40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16293 lncRNA upstream 795 10663333 ~ 10665110 (+) True lyrm4
TU16295 lncRNA upstream 1792 10663333 ~ 10664113 (+) False lyrm4
XR_006252713.1 lncRNA upstream 96897 10567881 ~ 10569008 (+) True LOC122359526
TU16195 lncRNA upstream 125915 10507334 ~ 10539990 (+) False G10901
TU16191 lncRNA upstream 144195 10507334 ~ 10521710 (+) False G10901
TU16444 lncRNA downstream 86244 10758056 ~ 10831642 (+) True G11077
XR_006252711.1 lncRNA downstream 148299 10820111 ~ 10822197 (+) True LOC122359515
TU16501 lncRNA downstream 224871 10896683 ~ 10897497 (+) True G11106
TU16516 lncRNA downstream 281238 10953050 ~ 10978280 (+) True G11117
TU16523 lncRNA downstream 448075 11119887 ~ 11123114 (+) False LOC122359491
XM_043259781.1 mRNA upstream 1791 10662729 ~ 10664114 (+) False lyrm4
XM_043259743.1 mRNA upstream 5444 10658601 ~ 10660461 (+) True nrn1b
XM_043259622.1 mRNA upstream 49609 10611990 ~ 10616296 (+) True nebl
XM_043259629.1 mRNA upstream 49609 10611990 ~ 10616296 (+) False nebl
XM_043259635.1 mRNA upstream 75445 10584873 ~ 10590460 (+) True bmi1b
XM_043259491.1 mRNA downstream 20698 10692510 ~ 10702785 (+) True oxsr1a
XM_043259432.1 mRNA downstream 31434 10703246 ~ 10706943 (+) True slc22a13a
XM_043259441.1 mRNA downstream 31434 10703246 ~ 10706219 (+) False slc22a13a
XM_043259452.1 mRNA downstream 62104 10733916 ~ 10741971 (+) True csrnp1a
XM_043259461.1 mRNA downstream 62107 10733919 ~ 10741971 (+) False csrnp1a
XR_006247735.1 other upstream 749044 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 750414 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 914693 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1493990 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2558128 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 39318 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 568314 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 668051 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 824548 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 824548 11496360 ~ 11498937 (+) False mast3a

Expression Profile