RNA id: XM_043259491.1


Basic Information

Item Value
RNA id XM_043259491.1
length 5056
RNA type mRNA
GC content 0.41
exon number 18
gene id oxsr1a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10692510 ~ 10702785 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGGTCGCCTCCAAGATTTTGACACGAGGAAGAGCGCTTTCCGCCTAAGGCGGGGTCACCATCTCTGTTGGCAAAGTTTGGCTGTTGAGACTGAGAGCGGTCGGCAAGATCGACATAAGTGCGTCGAGCTTAAACCCCGATCGTCCGATTTCTATCGCTCGCGGCCGAGTGAGCGTCAGTGTAGCGCGCGCCTGACGCGATCTGACTGCAGTTATGTCCGAAGACCCGAGCTCTCAACCCTGGTCTATCGACAAGGATGACTATGAGCTACAGGAGGTGATCGGGAGTGGAGCAACAGCTGTGGTCCAGGCGGCATATTGCAAACCCAGGAAAGAGAAGGTGGCCATTAAACGCATCAATCTTGAGAAATGCCAGACCAGCATGGATGAGCTTCTGaaagagaTCCAGGCAATGAGCCAGTGCCATCACCCAAATATTGTGTCTTATTACACCTCCTTTGTGGTCAAGGATGAGCTTTGGCTGGTCATGAAGTTGCTCAGTGGTGGCTCGGTTCTTGATTTCATTAAGTACATAATTTCCAAAGGGGAGCACAAATCGGGTGTCATGGATGAGGCCAGCATTGCCAGCATACTAAAAGAGGTGCTAGAAGGTCTCGATTATCTGCACAAAAATGGGCAGATTCACagGGATGTGAAGGCTGGAAATATTCTTTTAGGAGAAGATGGCTCTGTTCAAATTGCAGACTTTGGTGTTAGTGCCTTTTTAGCAACTGGTGGAGACATGACTAGAAACAAAGTGAGGAAGACGTTTGTAGGAACTCCATGCTGGATGGCGCCTGAGGTGATGGAGCAGGTTAGGGGTTATGATTTCAAAGCTGATATCTGGAGTTTCGGGATCACTGCTATTGAGCTGGCAACCGGGGCCGCTCCGTATCACAAATATCCTCCAATGAAGgttCTCATGTTAACCCTGCAGAATGACCCTCCTTGTCTAGAGACTGGAGTTACAGATAAAGAAATGGTTAAAAAATACGGCAAATCTTTTCGGAAGATGATCTCCTTGTGCCTCCAGAAGGATCCAGAAAAACGTCCAACAGCTGCTGAACTCTTAAAACACAAGTTCTTCACAAAAGCCAAGAACAATGAATACTTGAAAGAAAAATTGCTGGACAGGGCGCCAACAATAGGAGAGAGATCAAGGAGGGTGCGAAGGGTGCCGGGCTCCAGCGGTCGACTGCACAAGACCGAGGATGGAGAGTGGGAATGGAGTGACGATGAGCTGGATGTAGAGAGCGAGGAAGGAAAGGCTGCAGTGGCCGCTTTACGGTCACCAAGAGTAAAGGAGGAGGCTGTGCAAAATGCAGAGATCTTTCCATCGGATTCATCAAGCTTCCTGCAGCCAGCAGCTCCGGGACAGTCTGAAGTGCCACATGCTGCAGATGACACCGCCACGATATCAGCGTCTTCTCCAGGCTCCCAGGTTGGTGGACCTACTACGACAGGACAAGACTCGGCCAAAACCCCCATCAGCCTGGTTCTAAGATTAAGgAATACAAAAAAGGAGCTGAACGATATCAGATTTGAGTTCATGCCTGGCAGAGACACAGCTGATGGAGTGTCTCAGGAGCTCGTGTCTGCAGGACTGGTGGATGGGAGAGACTTAGTCATTGTCGCAGCCAATTTGCAGAAAATCGTTGATGATCCACAAACCcacaaaaatgtcacttttaagtTGGCATCTGGAGTGGACAGTTCTGAAATTCCAGACGACGTTAAACTCATGGGATTTGCTCAGCTGAGTATAAGTTAAAACAGTATTACCAGCGACAggaaaaaacgaaacaaaacacaGACTTGTTTGCACAACAGTGCACTGTAAATGCTTTCATTGGCCTAAAGAAACCACTACTGCCAAAGAGACAGAAGGAACCTGACACCACATAGGATTAACAAATGTTGAATGGGACTGCATCCGAGTTCTTCATAGGAGCGCACCTCAGATGTTTACAGTATTCATGTacgttttgttttctgttgctttaaacatttgcacaatCTGAACCAACTCCTAATACTGGTAGATGTCAAAAGAATGCCTTACTTTCGATTAGTACTACTGAATTTACAACTGTAGGTAGACTGTAGCTGTGGAGCTCATCTGTGAAGTGAATGAGTGACTGTGTGTGCGTTCAGCTGTGTACCTCAAAGGAAGGCGGAGAGGATTGTCATTCGATAGCATTTAAGGGCGCTTAGCTGTTCAACATATTGGCGCGATCAGCTTTGTATGGTTGTACAAATTAACCAGTAAACATGGGAGCCACTTTACCCACAACCCCGTCGGACATGATGTTTCACCGCTACACCCGTGCACTGCACCTCACGGTTACACCTTTCAGCTGCTTACTCACTATCGGGATGCGTTCCCATCATTTTGCATGGGCTAACGCCAGACTGCATGAATGATTTTTAACCTAAGATATGCTGATCATTTAATTTTGCCGGCTctctgtgaaagagagagatgaaatgAGATATTGAgcttgtaaaagaaaaaaacaacacacaaaaaaaaaaaaacgagaacaTGAGTTTTTCATCCAATTGATCTTTTTCGTGAAGGACGCGTATGCTGTTGAAATTCTCTGGAAATTGTGCATTTCAGATTATATTGGAAAGAGACTTATGCAATTTTTGTGGATTGAGCATAATGTTACAAGTTTCATTTAAACGCATATCTGCTAAATGTAGAGGCAGCTGTTTGGAAGGTGGTATagatttatgattttgtttttttggaaggAAATTCTAGTGTTTGCAAGGCGGCAAAGAAAACGCGTTAACgtttaaagtcattttgaaGTTCTCAATCTGTCAAAAATACTCAAAACAAAGTTGGAATGGAGTCCATACGTGGAACTATATGAACTAtgtatccacctttttcctgatCGCAAAGTAAGCCTATGGATGAGGAGTCAGTTTCGTTACACTATAGATTATAAATTAAGAGGTAAATAGCgtgcagtaaacagtaaaactgttttgtacTGTTTGTGTTCATGATTaagataatgcattaaaatagcaTAATAGGACacaccgatttttttttttttttttttttttttttttttaagaatcaagCAGCATTACtaactgttttataaagctaaaaatagcttGTCGCGGATGTGACCCATTTCTGCGTCAGGAAAAGGGtggatagaaaaataaaaacatgagtTTTATAGTTTGCTAGCCTTGCAAGCACTTTTAATGAAGGAAAGACCAGTGAAGCTTTGGACACAGTCACTGaccagcaagaaaaaaaaagaaaagtgacttTAGGATTCATCCTGTGTCCACGTAATATTGGCAATAGGATCCGTTGTATTTGAATTTGTGGGCCTGTTTGtgtctttgtaaatatttcagttcattGCATCTTGCTTAATATCATCCGTCTTAGTTGTAGACTGATGTCTGATTTCATGTTATATAGGCAGAAAATCTTTTCACATGCAACTggtattttttccccctttataaaacaaaattaaatggtCAAATTGCCAGTGATTTTGGCAATAacgttgttattattatttaaacctttttgctggactttttgttaaatttttCTTCTGATGATCTACACTCcacttccatttttattttcctctgtTATTTTCTCTCCTTGGCTTCCGacaaacagtacattttaagaCGGTTTTGAACCCGATTAATTGTAGACACGGTCTGTGATTCATTTGCTGTCACTTTCGCACTCGTGTGTATGTGCAAACgactgttgattttttttttttttctttttttaaatatatttagtgtgAATAAAACAATGAATGTGGATGGGACATCTTAACGAGTACttgatcaagaaaaaaaatcatgtaaataatcaaattggtgtttatatatatatatatatatatatatatataaatataaacagtatacaTACTGTTCACAGTTGGCCTTTCTATGGAGTGGACGTGGTGGTTGTCTAATGACTTGTTGGTTTCTTTGTGTTCACagtcaaaaaaacacaacacttgGGTTTCATTACGGAAACGTATccctgaaatattacattagcATGACTTGAGAATAGTTTATGTACTGCATTCTACTTTGTCAACAGTGGAGGGCtattattgttttctctttcagttTCTGCCTTGCCGTCTGTGTTGGAGTGTTTGCTGAGATTCTTAGAAGGAATGCTTGTGGTTCTgtcagttttgtgtttgtttgtgtgtttaaatgggCAACAGCTCATAACAGTGGCATGCCACCTTACTGTAATCGTTAAGATATCTCCAATACTTTAAATAGACTGTCAAGTCAAAGCTTAAACGCAATGAGTTCATTTCTTTAATGGTCTAAATAGTTGATGGCCCTGTCACGATTCTCTAAAGCCTCAAATATTTCCCATTTTCTCTTGAAAGACGCTTCCAAGTCCTCAAGTCTCATCCTCTTTCTCACCACGCTAGTGGATTGTGATAAGACAGTATTTATTTTCACGTGTGGACAAGTGGTTTGCCCTTTTCTGGAATTCGTTGGAAGTAATTCAACCGAGCACTTTGAAAATCGAAAGcatatattattgtttctcaTTTGTAGGATAATTAACTAAGCGGATCTGTCTTCGTATTGACAGATCAGATCTTGTTATGCTCATATTTCTGTACGGTGATGTTTGTTGAGGTGAGTTGTCTTAAGATCATTCCTCCGTTCTGTTTTGTCAGCAGTCTGGAAAGCTGCTGTATTTTCACACCAAGCACATGTATGCAGGTCTTACAAAAGAGGAACTGGCTGCATTTTAATGGAATATTTAGGTGTTTTCAATTCaaggttttttatttagtgtcttttaattttttcatgtttttatctAATTGAAGTTCAAGGAATGAATTGTCACGACACAACATAAATGGAGGTATTATTATCACTCTCTGTATGGTGTGTTAAGGACAATGGTAGAACACTGTATAGTATTTCACTTTTGGGATTTTCAGTGCATGTGTAcccaattatttttaataataatcaataaagaATGAAATTGC

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG:

id description
K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16293 lncRNA upstream 27400 10663333 ~ 10665110 (+) True lyrm4
TU16295 lncRNA upstream 28397 10663333 ~ 10664113 (+) False lyrm4
XR_006252713.1 lncRNA upstream 123502 10567881 ~ 10569008 (+) True LOC122359526
TU16195 lncRNA upstream 152520 10507334 ~ 10539990 (+) False G10901
TU16191 lncRNA upstream 170800 10507334 ~ 10521710 (+) False G10901
TU16444 lncRNA downstream 55271 10758056 ~ 10831642 (+) True G11077
XR_006252711.1 lncRNA downstream 117326 10820111 ~ 10822197 (+) True LOC122359515
TU16501 lncRNA downstream 193898 10896683 ~ 10897497 (+) True G11106
TU16516 lncRNA downstream 250265 10953050 ~ 10978280 (+) True G11117
TU16523 lncRNA downstream 417102 11119887 ~ 11123114 (+) False LOC122359491
XM_043259616.1 mRNA upstream 20698 10665905 ~ 10671812 (+) True rpp40
XM_043259781.1 mRNA upstream 28396 10662729 ~ 10664114 (+) False lyrm4
XM_043259743.1 mRNA upstream 32049 10658601 ~ 10660461 (+) True nrn1b
XM_043259622.1 mRNA upstream 76214 10611990 ~ 10616296 (+) True nebl
XM_043259629.1 mRNA upstream 76214 10611990 ~ 10616296 (+) False nebl
XM_043259432.1 mRNA downstream 461 10703246 ~ 10706943 (+) True slc22a13a
XM_043259441.1 mRNA downstream 461 10703246 ~ 10706219 (+) False slc22a13a
XM_043259452.1 mRNA downstream 31131 10733916 ~ 10741971 (+) True csrnp1a
XM_043259461.1 mRNA downstream 31134 10733919 ~ 10741971 (+) False csrnp1a
XM_043259549.1 mRNA downstream 39700 10742485 ~ 10748341 (+) True gorasp1a
XR_006247735.1 other upstream 775649 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 777019 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 941298 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1520595 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2584733 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 8345 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 537341 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 637078 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 793575 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 793575 11496360 ~ 11498937 (+) False mast3a

Expression Profile