RNA id: XM_043259306.1


Basic Information

Item Value
RNA id XM_043259306.1
length 2989
RNA type mRNA
GC content 0.47
exon number 15
gene id plcd1b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10494101 ~ 10506040 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGATACCTTTTACTGAGACGATAGCAGCCACAGGCAGGTAATCCGTACCTGCGAAGGGAAGACCAGAGGAACAGCGCGGCTCTCGGTTGCGTCTGTTTTGCGCCAGCGAGCCTTCGCGAGGTTTTGTGTCGTTTCTGTTTTGCGCGTGAACTCGAGAGCACCGGACAGATCGCGCGCGACGAGGATATAACAGtctgctggggttttttttttaaagagaaatggaTTCCAACGGCATTGCTGAGAGTCAAGGTTTGGAGGGAGATGGGGACCTGCAGTTCCTGATGAGCGGCGGAGATCTTCTGAAGGTCCGCTCGGGCTCGTGGAAGAAGACGCGCTACTACAAACTCCAGGAGGACTGCAAGACCATGTGGCATGAGTCCAAAAAGGCCTTGAAGTCCAAACAGACATTCTCTGTTGAGGACATCGACGAGGTACGAACGGGTCGGCAGACGGAGGGTTTGAGGAAATACACGGAGGAGTCGCTGGAGGGCCGAGCGTTCTCCATCCTGTTTAAGGGCAGGCAGAAAGGCCTGGACCTGATCGCCAGCTCTGAGGAGGAAGCCAAGAAGTGGGTCGGCGGTTTGGAGAAGGTCATCTCGAACACGAAGAACCTCACTCCTCAGAAGAAAACAGAGCACTGGATCTACAGCTGTTTGCGTAAAGCAGATAAAAACTTTGATGATAAGATCAGTCAGAAAGAGATGAAGAGCTTTCTGCAAGACATCAACATTGAGGTGTCTGAAGACTACGCTGAAATGCTCTTTCAGAAATGTGACCAATCAAAGGGTGGATTCCTGGAGGGCGAGGAGATTAAGCATTTCTATGAAATCCtgacacagagagaggagaTTGATGTCATCTATGCAGAGTATGCAAAGACGGATGGTCTCATGAGCGCCGCTGACCTGCTCAACTTCCTGCTGAACGAACAGAGAGAAGCCGTGTCTCAGAATGACGCCCTTCAGCTTATTGACAAATATGAACTTGATGAAAATGCCAAAGCCAAACAACAAATGACAAAGGATGGCTTCCTAATGTACTTGCACCAGCCGGAGGGGCTGATCTTTAACCCGGCTCATAAAAGTGTTTACCAGGACATGAACCAGCCTCTCAACCATTACTTCATCTCCTCGTCTCATAACACATACCTGCTGGAGGACCAGCTCAAAGGACCCAGCAGCACGGAGGCATACATAAAAGCACTTCTGAAAGGGTGCCGCTGTGTGGAGTTGGACTGCTGGGATGGATCAGATGACGAGCCGGTCATTTACCACGGATACACTCTCACCTCAAAAGTCCTCTTTAAGGATGTGATCAAAGCCATTCAAGAATATGCctttaagacGTCCAAGTATCCCGTGATCCTCTCTTTGGAGAACCACTGCAGTGTGGAGCAGCAGAAGGTCATGGCTCAGCACTTGATCTCCATCCTGGGTAGCGCTCTGGTCACCAAACCCCTCGGAGATCAGATGCCCACATGCCTCCCTTCTCCAGAGgaGCTCAAAGGTCGGTTCATAATCAAGGGGAAAAGACTAGACAAACTTGAGGACGTGTTTTCAGAGTCTAAAACGGCAGATGAAGACAGCGTAACAGAGGAAGAAGATGATGAGAAAGACGAAGAAGACCAGGAAAAGAAGTCTAGTTCGCTGAAGTTGGCGAAGGAGCTGTCTGATATTGTGATCTACTGCAAAAGCGTCCACTTCCAGGGATTTGAGGATTCCCGGGACAAGCAGTCCTTTTACGAGATGGCCTCTTTCAAAGAAGGAAAAGCTGTGAAGCTGGCGGAGGAATCAGTGAACGATTATATCCATCACAACATAGACAAACTCAGCCGGATTTACCCATCGGGAGTGAGGACGGACTCGTCGAACTATAACCCCGTGCCTCTGTGGAACGCAGGCTGTCAGATAGTGGCCCTTAACTTCCAGACGCCCTGCCCAGAGATGGATCTGAACCAGGGGCTTTTCCTCCAGAACGGACAGAGCGGTTACAACCTCAAGCCTTCTTACCTACGAGACCGAGACACTACATTTGACCCCATCGTTCTTCCAGAAGGACCGTGGTTAAAGAACAAGACTCTTCATGTGATGGTGATCTCAGCCCAGCAGTTACCCAAAGTGAGTGAAAGGAAGTCCTCCATTGTGGATCCTATTGTTAAAGTGCAGATCTACGGTGTGCCAGCAGATACCACTGTGGTGGAAACGCAGTACATTGAGAATAACGGCTTCAACCCCATGTGGAACGAGAACTTCCAGTTTGATGTGCGTGTGCCAGATCTAGCCCTTGTGCGCTTTCTGGTCGAGGACTACGACTTCAGTTCGAGCAATGAGTTTATTGGCCAGTACACGCTTCCCTTTAACAGCCTGAAGAACGGATATCGTCATGTGCCACTGCTCACTGTGAATGGAGACGACCTTTCCTCCGCTGGGCTTTTCGTTCACATCATGGTTGTGGATGCTGAATAACATACGATAGCACAGGCTTTATACTCCGTCTGAGATGATCATATGTTGAAGAGTCGGCAAAACACGAGGCAGCTTGAGTGATCCTAATGGGTAAATGAGACATTTGTGGGAATAGAGCAACTTTTCTGAAGTTGCGATATGACGGTTTCGCATATCaattactttttatactttttactatttgtaaaatacatttcttacaCTTTAGTACGCCAAATAGATTGCCCGAGTGTCCATCTTTAGCGTTAGTTAAACTGAACACTGTTTTTAGAGATGCAGATTTTAGCCGAGGAATCGTTTGATGGTGGAAATAGAAATCCTCTGGGTAGATTCTCTACTTGTTTTTAAGCCTgcattagattttatattttttgtcttataTGTAGTTACATAACACTTTCGATTTATAAATGAGGTACTTAAACGCCATAATACTCGTAAAATCAGTGATTTTGATAAAACCCATTGCCAGCTGTATACATTCATGTAAAggtgaaataaatgtaagttATTCAAAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16218 lncRNA upstream 11149 10445181 ~ 10482952 (+) True G10914
TU16224 lncRNA upstream 18818 10470121 ~ 10475283 (+) True G10918
TU16204 lncRNA upstream 100951 10392693 ~ 10393150 (+) True G10903
TU16203 lncRNA upstream 102145 10391669 ~ 10391956 (+) True G10902
TU16166 lncRNA upstream 284250 10209563 ~ 10209851 (+) True G10883
TU16191 lncRNA downstream 1294 10507334 ~ 10521710 (+) False G10901
TU16195 lncRNA downstream 1294 10507334 ~ 10539990 (+) False G10901
TU16200 lncRNA downstream 1294 10507334 ~ 10521710 (+) False G10901
XR_006252713.1 lncRNA downstream 61841 10567881 ~ 10569008 (+) True LOC122359526
TU16293 lncRNA downstream 157293 10663333 ~ 10665110 (+) True lyrm4
XM_043259710.1 mRNA upstream 47299 10425919 ~ 10446802 (+) True ralab
XM_043259697.1 mRNA upstream 63028 10426028 ~ 10431073 (+) False ralab
XM_043259704.1 mRNA upstream 63028 10426029 ~ 10431073 (+) False ralab
XM_043259588.1 mRNA upstream 68655 10422736 ~ 10425446 (+) False c2h7orf25
XM_043259593.1 mRNA upstream 68655 10422837 ~ 10425446 (+) True c2h7orf25
XM_043259505.1 mRNA downstream 16321 10522361 ~ 10528919 (+) True hhatla
XM_043259514.1 mRNA downstream 16322 10522362 ~ 10528919 (+) False hhatla
XM_043259330.1 mRNA downstream 24568 10530608 ~ 10534110 (+) True klhl40a
XM_043259635.1 mRNA downstream 78833 10584873 ~ 10590460 (+) True bmi1b
XM_043259622.1 mRNA downstream 105950 10611990 ~ 10616296 (+) True nebl
XR_006247735.1 other upstream 577240 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 578610 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 742889 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1322186 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2386324 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 205090 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 734086 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 833823 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 990320 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 990320 11496360 ~ 11498937 (+) False mast3a

Expression Profile