RNA id: TU16224


Basic Information

Item Value
RNA id TU16224
length 964
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G10918
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10470121 ~ 10475283 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTAAACACACGCCACGTGTCTCTGAGGTCTGGGTGAGAGTCGATCACTTAGCAGCCCTAACAACCCATTAATGTCATCACATTTCCTCATGAGGCACTAAAACATCCCTCACCTGGCTCAGCGAAGGTGATGATCTCGAAGGGCTGCTCCTCAGGTTGCTCTCGGTGTTCCCCCAGCCCCCCTCCATCTTCCTCCATCTCCACCGTGCCGTCCTCACCCACCCGTCCCACGTGCAGCTTGCGGATGGCGTTGAGCAGGGCGGCGCGGGGCACGGGGTGAGTGACGTTGGGCCGGGCGTTCAGATGCAGCATGTTGAGGATGTGCCTCTTGACCGCCTCCACCATGTCGGTCTGCTCTTCCGAGTCCTTCTGCCTCTGGGCTAGAGCGCAGGACGGGCAGGGGGTCACGGGATCTTGAGAGCCGCTCTCGGCCGGCGTGGGCGAGCAGCCCCCTGACAAACAGCCGGAGAGCAGCAGCACCCCAGTCACGAGAGTGAGCGAGGACATCCTGAGTGACGGCAGACTCACACCTCGGTCCTGTTCTGCTCCGCTGCCAAGATCACAGTCGCCGCGCTGGCTTGCTTGTCAGATCGATGCGGAAAGCGGGAGCCGGTCCAAAATAATCCTTATCTGAGCGGAGCGGTCATGGTGATAAAAGTTGAAGAGGGCTGAACGAAGCGCCGCCGGTGAGCTCCTCCTCCGGGTCGCTCTGTAGAAACCTGACGGTGCACGGCTGCCCGTGCCGGAGTTgaatggttgagtggaaagtgGGCAGGGTTAGACAGTTCTCTGACTCTTTCTTTagcactctctccctctctggcTTCTCACTGTTtgtcccctctctctttctctctctgtaattATAccttcctcctcttcatccCTCCCTCTCACTTTATTACAATCTTTCTCACTACTGACTCACTGACTTTTTcatctccctccctccctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16204 lncRNA upstream 76971 10392693 ~ 10393150 (+) True G10903
TU16203 lncRNA upstream 78165 10391669 ~ 10391956 (+) True G10902
TU16166 lncRNA upstream 260270 10209563 ~ 10209851 (+) True G10883
TU16057 lncRNA upstream 308312 10158553 ~ 10161809 (+) True selenof
TU16087 lncRNA upstream 328150 10141342 ~ 10141971 (+) True G10838
TU16201 lncRNA downstream 14307 10489590 ~ 10509519 (+) False G10901
TU16191 lncRNA downstream 32051 10507334 ~ 10521710 (+) False G10901
TU16195 lncRNA downstream 32051 10507334 ~ 10539990 (+) False G10901
TU16200 lncRNA downstream 32051 10507334 ~ 10521710 (+) False G10901
XR_006252713.1 lncRNA downstream 92598 10567881 ~ 10569008 (+) True LOC122359526
XM_043259710.1 mRNA upstream 23319 10425919 ~ 10446802 (+) True ralab
XM_043259697.1 mRNA upstream 39048 10426028 ~ 10431073 (+) False ralab
XM_043259704.1 mRNA upstream 39048 10426029 ~ 10431073 (+) False ralab
XM_043259588.1 mRNA upstream 44675 10422736 ~ 10425446 (+) False c2h7orf25
XM_043259593.1 mRNA upstream 44675 10422837 ~ 10425446 (+) True c2h7orf25
XM_043259306.1 mRNA downstream 18818 10494101 ~ 10506040 (+) True plcd1b
XM_043259298.1 mRNA downstream 21142 10496425 ~ 10506040 (+) False plcd1b
XM_043259505.1 mRNA downstream 47078 10522361 ~ 10528919 (+) True hhatla
XM_043259514.1 mRNA downstream 47079 10522362 ~ 10528919 (+) False hhatla
XM_043259330.1 mRNA downstream 55325 10530608 ~ 10534110 (+) True klhl40a
XR_006247735.1 other upstream 553260 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 554630 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 718909 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1298206 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2362344 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 235847 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 764843 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 864580 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1021077 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1021077 11496360 ~ 11498937 (+) False mast3a

Expression Profile