RNA id: TU16200


Basic Information

Item Value
RNA id TU16200
length 1024
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G10901
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10421937 ~ 10539990 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaggtgcTTTAATATAACATGTCAGAGTCCGGAAGAAAACTTGCGACAACCATGAATCAATTCAGCTTGAAATATACTCCAAACATCAGCACTGCACAGCCTCTCCAAACTGATTTCAATCTGTGGACCTTTTAAAGTGTCTGTATGGCTTACTGAAAGAAAATTATCGCTAAAGAAAATAAGGCATAATTTAATTGAACGTGCCAGATATTTTAAGTGACGTCACAAAAACATAGTGTGTTAAAAAGCAGCACCTGACTGTTTAGTTGTGTGAAAAACAGAAGCATCACCTGTGAGCAAAACCGATAGTGTTTAAACGCTGCCAGATCACCAGGACGCggtgtcaaaaaaaaagtgaaatttgcAACGTGTTATGCATTGTTTGACCATTAGAAACAAAAACGCTAGCAAGCCAAATCGACGGCGACGACTGAAGAGAGGCTGTACAGCGCATCAACGAGCAGAAAACAGCAAGTGTGGGCTAACATAAGCATACATCTCGAATACTGACAGAAGACCAAAAACGTGAGAATGAATCGCCCTCCATCGCCTGCCGCAGAACAGGAtgaacagagagagatagagagaggtAGACGATGAAagactgaggggaaaaaaactaaaacgtgGACAACGTGTAGACACCGAACCGTGACGTGACGGACTCTgggcagagagaaagaaagagaggttATTGCCTGTTCAGCAGCGATCGGGACGTCCCGCCGCCGCTCCTCTCGTCTTAGGCACTGCGGTGATGGAGAGTCTGCACAGCTTGCGCCGAACGCTTTCGAACCCTCACTAGGAGAAAAAGTTTAGCTCTGCGAGAGGGCAAAAGCAAAGCCTACAAGCTGCGCAGAGCTCTAGTCCCTGGGCTGGTACTGGTGGTACCCTACAGGGAGGTCTTTTGTAGTGTAGTATACAGTGATAGCAGCAGCAGGGTATGGTTTAAAACGAGTCGAAactaatccaaaaaaaaaaaatatatatatatatatatatatatatatatataaatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16218 lncRNA upstream 24382 10445181 ~ 10482952 (+) True G10914
TU16224 lncRNA upstream 32051 10470121 ~ 10475283 (+) True G10918
TU16204 lncRNA upstream 114184 10392693 ~ 10393150 (+) True G10903
TU16203 lncRNA upstream 115378 10391669 ~ 10391956 (+) True G10902
TU16166 lncRNA upstream 297483 10209563 ~ 10209851 (+) True G10883
XR_006252713.1 lncRNA downstream 46171 10567881 ~ 10569008 (+) True LOC122359526
TU16293 lncRNA downstream 141623 10663333 ~ 10665110 (+) True lyrm4
TU16295 lncRNA downstream 141623 10663333 ~ 10664113 (+) False lyrm4
TU16444 lncRNA downstream 236346 10758056 ~ 10831642 (+) True G11077
XR_006252711.1 lncRNA downstream 298401 10820111 ~ 10822197 (+) True LOC122359515
XM_043259306.1 mRNA upstream 1294 10494101 ~ 10506040 (+) True plcd1b
XM_043259298.1 mRNA upstream 1294 10496425 ~ 10506040 (+) False plcd1b
XM_043259710.1 mRNA upstream 60532 10425919 ~ 10446802 (+) True ralab
XM_043259505.1 mRNA downstream 651 10522361 ~ 10528919 (+) True hhatla
XM_043259514.1 mRNA downstream 652 10522362 ~ 10528919 (+) False hhatla
XM_043259330.1 mRNA downstream 8898 10530608 ~ 10534110 (+) True klhl40a
XM_043259635.1 mRNA downstream 63163 10584873 ~ 10590460 (+) True bmi1b
XM_043259622.1 mRNA downstream 90280 10611990 ~ 10616296 (+) True nebl
XR_006247735.1 other upstream 590473 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 591843 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 756122 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1335419 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2399557 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 189420 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 718416 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 818153 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 974650 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 974650 11496360 ~ 11498937 (+) False mast3a

Expression Profile