RNA id: XM_043253491.1


Basic Information

Item Value
RNA id XM_043253491.1
length 2033
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC122355329
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10212891 ~ 10215867 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGAGTGCATCTTCAAGGAATAAAGCCAAGCTCTAGTTCCACAAGTTTTTGTCTCCCCAGCAGTCATGATACTTAGCATCGCCCTCATTTGGGCTATAGTTGTTGCGCTCTGTTGTTGTCTTTGGCTTATCACAGGAATACGCAGAagACAGCCTGGGGAGCCTCCAGTAGAAAATGGCTGGATTCCTTACCTTGGTTGTGCTCTTCAGTTTGGTGCCAATCCTTTAGAGTTTCTTCGCAGCAGACAGAAAAAACATGGtcacatttttacatgcaaGATCGCTGGGCAGTATGTCCATTTCCTTTGTGATCCGTTCTCCTACCACGCTGTTATCCGCCAAGGAAGGCACCTTGACTGGAAGAAATTTCACTTCGATGCCTCTGCAAAgGCATTTGGTCATGAGAGCATGGATCCCAGTCAAGGTTTCACCACCGAGAACCTGCATCAGACCTTCCTGAAGACCCTACAAGGGGAGGCCTTGTCTCCTCTCATTGAGACCATGATGGAAAACCTACAGAGCACCATGCTGCAGTCAGGCATCCTGAAGGCCAAAGCCTCCGAATGGCAGAACGATGGTATTTTTGCCTTCTGTTACAAGGTCATGTTTGAAGCAGGCTACCTGACCCTCTTTGGAAAGGAACTGGACGGAGACCAGAGCATTGCACGTCAGCAGGCCCAAAAAGCTCTGGTGCTCAATGCATTGGAGAACTTCAAAGAGTTTGATAAGATCTTCCCTGCTCTGATCGCTGGTCTCCCCATTCATGTTTTCAAAAGCGCCTACAGCGCTCGCGAAAATCTCGCCAAGACAATGCTCCACGAGAACCTCAGCAAGCGTGCAAATGTGTCTGACCTCATATGCTTACGCATGCTCTTGAATGACACATTATCTACCTTCAACGAGCTCAGCAAAGCCAGGACCCATGTGGCCATGCTGTGGGCTTCACAAGCCAACACTTTGCCTGCAACCTTCTGGACCCTGTTCCATATGATCAGGTGCCCTGCGGCTATGAAAGCTGCTGGCGAGGAGGTGAGGCGAACATTTGAAAGCTCTTACCAGAAAGTCGATCCCATGAATTCTCGACTTGTACTAACAAGGGAACAGTTGGACAACATGCCAATTCTAGACAGTATCATTAAAGAGGCTATGAGGCTGTCCAGCGCGTCCCTGAATGTGAGGATGGCCAAAAGCAATTTTCTTCTTCACCTGGACAACAACGAGTCTTATCACATCCGCAAAGACGATGTAATAGCTCTGTACCCTCCGATGATTCACTTTGATCCTGAGATCTATGAAAATCCTCTGGCATTTAAGTATGATAGATACCTTGACGAGAATGGACAGGAGAAGACCAGCTTTTACCGAGACGGGCGAAGACTTCGTTACTACTACATGCCGTTCGGCTCTGGGGTGACCAAGTGTCCTGGACGCTTCTTTGCTGTGCACGAGATCAAGCAGTTCCTGTCTCTGCTGCTAGCGTACTTTGAAATGGAGCTTTTAGACCCTGATGTGAAAGAACCGCCTCTGGACCAGTCTCGAGCCGGACTGGGTGTTTTGCAGCCCACCTATGATGTTGACTTCCGATACAGGCTCAAATCCCACTAGGAGTCGCACACCTATTTATGGACTGTTGTCTTAAGctgtaaataatgtacattttgcaTCGCGTCCAAGCAGACAAATGTGAATAGGTttcaattttgttttctttctattcAAGTTGATTTGAGAGAGATGTTACTAAGTTTGAAAGAAACTTCAGAGAtcgtcttttaaaaacaattcagtaACATTTACTGCACTTATcctatgtttatttttcttctcaaTTCTTATCATATCTGGCAGTATTCAATATACGATATTGAATATATGTTAGAAATTGTAATCACTTTCTAACATCACTTGTCCTATTTTCATTtgccatttttgtaaaatgatgtGCTTCGTAATTGCAAGTGAATTTTACTTACAAAAGGTGCTTGAAGGTGCTGTAAGCAATTTTATATggaattaaaagcaaaaaaacccaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00489 CYP7A1; cholesterol 7alpha-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16166 lncRNA upstream 3040 10209563 ~ 10209851 (+) True G10883
TU16057 lncRNA upstream 51082 10158553 ~ 10161809 (+) True selenof
TU16087 lncRNA upstream 70920 10141342 ~ 10141971 (+) True G10838
TU16060 lncRNA upstream 149077 10058532 ~ 10063814 (+) True G10819
TU15980 lncRNA upstream 197069 10014559 ~ 10015822 (+) True G10753
TU16203 lncRNA downstream 175802 10391669 ~ 10391956 (+) True G10902
TU16204 lncRNA downstream 176826 10392693 ~ 10393150 (+) True G10903
TU16198 lncRNA downstream 206070 10421937 ~ 10509519 (+) True G10901
TU16218 lncRNA downstream 229314 10445181 ~ 10482952 (+) True G10914
TU16224 lncRNA downstream 254254 10470121 ~ 10475283 (+) True G10918
XM_043223700.1 mRNA upstream 14615 10168240 ~ 10198276 (+) True fam110b
XM_043223707.1 mRNA upstream 14615 10168240 ~ 10198276 (+) False fam110b
XM_043223715.1 mRNA upstream 14615 10168256 ~ 10198276 (+) False fam110b
XM_043223876.1 mRNA upstream 51113 10158532 ~ 10161778 (+) False selenof
XM_043263585.1 mRNA upstream 92952 10114573 ~ 10119939 (+) True gtf2b
XM_043259687.1 mRNA downstream 109191 10325058 ~ 10336681 (+) True rab2a
XM_043259223.1 mRNA downstream 121656 10337523 ~ 10378222 (+) True chd7
XM_043259240.1 mRNA downstream 121656 10337523 ~ 10378222 (+) False chd7
XM_043259233.1 mRNA downstream 122526 10338393 ~ 10378222 (+) False chd7
XM_043259588.1 mRNA downstream 206869 10422736 ~ 10425446 (+) False c2h7orf25
XR_006247735.1 other upstream 296030 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 297400 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 461679 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1040976 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2105114 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 495263 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1024259 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 1123996 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1280493 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1280493 11496360 ~ 11498937 (+) False mast3a

Expression Profile