RNA id: TU16198


Basic Information

Item Value
RNA id TU16198
length 1217
lncRNA type read_through
GC content 0.41
exon number 2
gene id G10901
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10421937 ~ 10539990 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaatatatatatatatatatatatatatatatatatatataaagatgatGGACCTGTACCAATTCTCAAGAACTCGCGACTCAaacaaaagaattaaaaacGATAAAAGGGATACATTTGCAATTGTGCATCCTGGTTTACGTAAAAGGACATTTCCCCTTTAAAAACGACTAGCGGGGGAACAACTGCAGTGTCTACGCTACTTCACCAAAGGCATTCGGATCAACaaagttccaaaaaaaaaaaaagctaaaacgtTCTGTTTTTGAGATGTCCAAACATTTGTCTCCAGCACCAATATTAGCGTCGGGGGGCCTGTTTGCCGAAAACGAAACGTATTTCAGCATCGGATTGCGAGACAAATATTAGCGATTGGCACGATTCAAGGGGTTAGTTGGCAAAAAGAGGCTGTGGTATATGAGACGAGTAACCTAACAAGTGCAAATGCATTCCTTTGCTCTTAGAAAACGAACTAAACATATACAAGTCTAGATAATAGTTTCGGTCTATATAATGGCACGAGCTAAAGCAAAATCGAAAACGAAAGGAGCACGAGAAGAACAGAAGATGGAGACGTGTACCCAgctttacataattaaaaatctcTGGCCTCTTTTAACAGTGCTTTTATAAAAAGAGTCTGACCTGCCtccgttttaaagcatataattCTTGTAAAGATTAGGTTCTCTGGAAATATGTCGtgtacaaaatgttaatttcccCCGTAAAAATGACATTCAAAAAAGGCACTTTGTTGGGTCGGAGAGGAAACCCCACAGTCCTTTAAACCCTACGGATTTCTacctgcatagcaacacctcaGAGAATGGTTATGGACTTGGATATCGTttcaaaaaaagggaaagaaaaagtAGTATAGTTGATTTTTTGGTTTATCATAAGCACTTTTTCAAAAGAGAAGTATTCGAGTGTCTGTTAATGTTCAGAGTCTGTTGATGTCCTGGTGGTGTGGGTGAGGTGAGGACCGCAggctggaggagagaggagagaggagagagagcagCCTGCTACCTGCCCCTCAGGTTCTGCAGCACCCCGTACACGTCCTCCTCTTTGCTCAGTCCCTCGAAGAAAGGCAGCAGGTCCAGGAGCTCCGTGTCATTCATGTCATCAAACCACGACTGCACGGGAACCTTCACCAGACACACACGGACAGTTGTTATCTGACAGTGTCACATTCATGTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16204 lncRNA upstream 28787 10392693 ~ 10393150 (+) True G10903
TU16203 lncRNA upstream 29981 10391669 ~ 10391956 (+) True G10902
TU16166 lncRNA upstream 212086 10209563 ~ 10209851 (+) True G10883
TU16057 lncRNA upstream 260128 10158553 ~ 10161809 (+) True selenof
TU16087 lncRNA upstream 279966 10141342 ~ 10141971 (+) True G10838
XR_006252713.1 lncRNA downstream 58362 10567881 ~ 10569008 (+) True LOC122359526
TU16293 lncRNA downstream 153814 10663333 ~ 10665110 (+) True lyrm4
TU16295 lncRNA downstream 153814 10663333 ~ 10664113 (+) False lyrm4
TU16444 lncRNA downstream 248537 10758056 ~ 10831642 (+) True G11077
XR_006252711.1 lncRNA downstream 310592 10820111 ~ 10822197 (+) True LOC122359515
XM_043259223.1 mRNA upstream 43715 10337523 ~ 10378222 (+) True chd7
XM_043259240.1 mRNA upstream 43715 10337523 ~ 10378222 (+) False chd7
XM_043259233.1 mRNA upstream 43715 10338393 ~ 10378222 (+) False chd7
XM_043259687.1 mRNA upstream 85256 10325058 ~ 10336681 (+) True rab2a
XM_043253491.1 mRNA upstream 206070 10212891 ~ 10215867 (+) True LOC122355329
XM_043259505.1 mRNA downstream 12842 10522361 ~ 10528919 (+) True hhatla
XM_043259514.1 mRNA downstream 12843 10522362 ~ 10528919 (+) False hhatla
XM_043259330.1 mRNA downstream 21089 10530608 ~ 10534110 (+) True klhl40a
XM_043259635.1 mRNA downstream 75354 10584873 ~ 10590460 (+) True bmi1b
XM_043259622.1 mRNA downstream 102471 10611990 ~ 10616296 (+) True nebl
XR_006247735.1 other upstream 505076 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 506446 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 670725 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1250022 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2314160 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 201611 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 730607 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 830344 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 986841 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 986841 11496360 ~ 11498937 (+) False mast3a

Expression Profile