RNA id: XM_043224583.1


Basic Information

Item Value
RNA id XM_043224583.1
length 853
RNA type mRNA
GC content 0.48
exon number 5
gene id cldn18
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10078400 ~ 10079945 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGATCCTAGACCAGAACCCAAGACAGAAGCAGAATGAGTGCCTCAGCACTACAGACCGCAGGTTTTGTATCGGGCGCCATCGGTACGGTAGGAGTTCTTGCTGCAACGGTTATGGATGTGTGGTGCACCGAAGACCAGCAGGAGAACAAGGCCACCTCCAGCTACCATTATAAGGGCCTGTGGAAGGACTGCGAGGTGTCCCAGACGGGACTTGCTGAGTGCCAGCCTCTTTACAGCTTCCTGAGCTACTCAAGAATCCTTCAGGCTATAAGAGCTCTGATGATAGTGGCAGTATTAGTCGGTGTGATTGCAGTGTTCATCGCATTCTTCTGCCTGAAGTGCCTGAATATAAGAAGCATGGATCTCCTGACCAAGGGCAAACTGGTGCTAAGTGCAGggattttatttatcattgctGgcatttttgacatttctggATCATCAGTGTATGCTGATCAAATAGTGCCTAGTTTCATGATGCAATACCCGACCCAACATAATCAAAAGCAAGGAGAGAAGGGAGGAGTAAATTGTGGGAATGGCATGGGCATGGGCATGGGCACGGGTACGGGTATGGGCATGGGCATGGGAGgaaatgatttatttgcttTCAGGTACACATTTGGTTCCGCCCTCTACGTAGCCTGGGTAGCTGGAGCTTTGTTGCTTTTGGGAGGaattttgaaatgcattgcattCTGTACAATGCAAAACAACACCGATACGAGAGATGGCTATATTTACAATGCCACAGCCCAGCGGAGTGGGGCAGATGAAGACTGTCACCTCCAGAGAGTGAGAggagaacaacaacaaatttaagcaaagaaaaaaaaaatcttgtcagTCGTA

Function

GO: NA

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16060 lncRNA upstream 14586 10058532 ~ 10063814 (+) True G10819
TU15980 lncRNA upstream 62578 10014559 ~ 10015822 (+) True G10753
TU15979 lncRNA upstream 64034 10011937 ~ 10014366 (+) True G10752
TU15953 lncRNA upstream 67654 9989143 ~ 10010746 (+) True G10738
TU16087 lncRNA downstream 61397 10141342 ~ 10141971 (+) True G10838
TU16057 lncRNA downstream 78608 10158553 ~ 10161809 (+) True selenof
TU16166 lncRNA downstream 129618 10209563 ~ 10209851 (+) True G10883
TU16203 lncRNA downstream 311724 10391669 ~ 10391956 (+) True G10902
TU16204 lncRNA downstream 312748 10392693 ~ 10393150 (+) True G10903
XM_043219487.1 mRNA upstream 1066 10075157 ~ 10077334 (+) True LOC122324805
XM_043224595.1 mRNA upstream 16684 10055965 ~ 10061716 (+) True stk25b
XM_043253597.1 mRNA upstream 29294 10046848 ~ 10049106 (+) True thap4
XM_043253606.1 mRNA upstream 29294 10046848 ~ 10049106 (+) False thap4
XM_043219759.1 mRNA upstream 37547 10036539 ~ 10040853 (+) True agxtb
XM_043258511.1 mRNA downstream 16464 10096409 ~ 10107424 (+) False znf644a
XM_043258504.1 mRNA downstream 16476 10096421 ~ 10107424 (+) True znf644a
XM_043263585.1 mRNA downstream 34628 10114573 ~ 10119939 (+) True gtf2b
XM_043223876.1 mRNA downstream 78587 10158532 ~ 10161778 (+) False selenof
XM_043223700.1 mRNA downstream 88295 10168240 ~ 10198276 (+) True fam110b
XR_006247735.1 other upstream 161539 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 162909 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 327188 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 906485 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1970623 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 631185 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1160181 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 1259918 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1416415 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1416415 11496360 ~ 11498937 (+) False mast3a

Expression Profile