G92087 (slc1a4,LOC107725464,LOC107552941)


Basic Information

Item Value
gene id G92087
gene name slc1a4,LOC107725464,LOC107552941
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8929442 ~ 8965589 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136326
aacagcttttttaattcttttagtTTAATTCTTGTTAATTGTTGTAAACTAAAATGACAACATTTGGTAAATAACAGAAATTCTACAATactcttattattttaatttatagaaaattattatttctgttggCTAAAACAAAACTCATGCagtgaatgaaaatatttcactcactgtgcttcttcttctttcttttttttttttttttttttatcaGAGACACAAATGCTTTTGATTTAATAGTAAGCAGAGACACACAGATACGTCGGTAACAAGATAACACGGTTAAAAGAGTGAAAAAATATAaggaaaaatgcatataatacacACTAATCAAGTGCTAATTAACAGCTTTTAGAGTTTATAAACccttaacaaaaataattttcaatgtGGTACAAAAGGCTAAACaattagaataaattaaactCATTCATACTTATCAAATTGTCGTTTTAAAATCGTTTACTCCTTAACTAATGGCCAAACTTACAGTTGGgcatgtacataaaaaaaaaatcaagacaaaGTCAATGTTTATAATTCCACTGAGCACTAGGTGTCACTGGATGCCATGGGTGATGTTCTTGGGTcagcagtgtttatttttaatgtaaaaaaattgaaGTCTATCAAGAAATGTTTGGCCTCCAGCGTGTCTCTCATCATCAGGTTGAATATCACCTGTGACCCTGAGTTGtaataatgttcatttaaaaatgtaaagttcacCAGATTTGAAAGTAATACAACCATAAAGCACAGGCTCAGAATCTGCTAGAATTCCCAAGAGTGTTTCACAAGCACACATGCACAGTTTCGATATAGTCCCCAATAAATCACCGGACACTACCACAATGCAACAGAATTTGCCATTAGGGACACACATATTTACAGCAAATACTTTCCGGTCTATCTTCAAAATAGTTAATGTTTCACACAGTCAGTTAAAATAtagcaaacaaacagagcaagaGGTCAGTCTGTGAATGATTTTCATTACTATCCATGTCTTTACCAGAAATCTGCTCGCGCAGTGGAAATGTTCCCTTTTAGGTTTTGCACATAATCTGGGTCATGTTCCCAtacacaaaaattacaatatgaaataattttggCACAACTGGATAAGATTATCATAACGTAACCTGTCCTGTCAAGTACTAAATGTAAAAGAGCAAACTGACCATTAGTGTTCCACTCACAGACCTGAATAAACTTTATGCTTGATGTAAACGTCACACTGGAGGCAACATCGTGTCTGTAGTGGTTTTTAAAGGAGTGAGATAGAGGAAGagtgaagaagaaagagaagagaccACAGTCAGCACTTCACAGCACAGACTCCACACCGTCCCTGTCGAGTGTTTCACGCGAGGAACTGTCTCCTTGGTTCTGGTGTGTGACGAGAGGGGAGGTCTCCTCTTCTGCTTTAACATTAGCCACCACCTCCACCCTCACCTCCTGCAGTTCCTGCTCCTCGTGATGCTCCTCCTGTTctctttgtttcttcatctcttGCTCATTGATGTGGTGAAGAATGCCCGCACCGAGTGCATCCCCCTCCACGTTCACAACAGTAGTGGTTCGGTCTCTGATCACACATCAGACACAGTTTGTTAACAGATTACATAAGAGTTAaaaactgtatgtat

Function

symbol description
slc1a4 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pancreatic system; and yolk syncytial layer. Orthologous to human SLC1A4 (solute carrier family 1 member 4).

NR:

description
PREDICTED: neutral amino acid transporter A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136326 True 1655 lncRNA 0.36 2 8929442 8965589

Neighbor

gene id symbol gene type direction distance location
ccsapb LOC107725482,LOC107601854,LOC107666447,LOC107676587,LOC107552946,LOC107743530 coding upstream 19649 8905886 ~ 8909793 (+)
acta1b act2,actc1a,LOC105907633,LOC107678759,LOC108430668 coding upstream 24431 8901550 ~ 8905011 (+)
abcb10 abcb10,LOC107666478,LOC107725469,LOC107601852,LOC107676605,LOC107743532,LOC107552914 coding upstream 29160 8892993 ~ 8900282 (+)
pgbd5 pgbd5,LOC107725485,LOC107552948,LOC107743535 coding upstream 121915 8791156 ~ 8807527 (+)
agt agt,LOC107666501,LOC107601848,LOC107725476,LOC107676582,LOC107552950,LOC107743538 coding upstream 146674 8779155 ~ 8782768 (+)
sertad2b sertad2,sertad2b,LOC107666512,LOC107676574,LOC107743523,LOC107725465 coding downstream 9500 8975089 ~ 9008344 (+)
lgalslb lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding downstream 48403 9013992 ~ 9020883 (+)
echs1 echs1,LOC107601864,LOC107666378,LOC107676592,LOC107743519,LOC107725439 coding downstream 55706 9021295 ~ 9023686 (+)
msx3 msx3,LOC107743518,LOC107552925,LOC107601809,LOC107725487,LOC107666509 coding downstream 100491 9066080 ~ 9068744 (+)
adam8a adam8,LOC107725440,LOC107666510,LOC107743615,LOC107676563 coding downstream 107253 9072842 ~ 9080744 (+)
G92066 NA non-coding upstream 32533 8836716 ~ 8896909 (+)
G92048 NA non-coding upstream 138390 8789731 ~ 8791052 (+)
G92047 NA non-coding upstream 140241 8788997 ~ 8789201 (+)
G92046 NA non-coding upstream 141593 8786988 ~ 8787849 (+)
G92045 NA non-coding upstream 142578 8786595 ~ 8786864 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding downstream 84778 9050367 ~ 9097905 (+)
G92111 NA non-coding downstream 174628 9140217 ~ 9144511 (+)
G92147 NA non-coding downstream 298475 9264064 ~ 9275699 (+)
G92313 NA non-coding downstream 484857 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 513832 9479421 ~ 9479752 (+)
sf3b5 sf3b5,LOC107601807 other upstream 189347 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 246390 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 618618 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 1042752 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 1090497 7836180 ~ 7838945 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 60354 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 115259 9080848 ~ 9089121 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 195928 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 464589 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1239524 10205113 ~ 10249725 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G76994 NA non-coding CI01000012 null 12652366 ~ 12665651 (-)