G107019 (myo1c,LOC107756890,LOC107743634)


Basic Information

Item Value
gene id G107019
gene name myo1c,LOC107756890,LOC107743634
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15355189 ~ 15356673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU158074
CAGAAATCATAACAAGAGTGTGAGGTCCATCTCTCACCTTCACCAGATACTGGTACTGCTGGGTGTTCTTCTCCAGGCCCAGCCTCCTCAGCAGATCATCCTCTCCTCCCTCGATAAGCTGATAAAAGATGTGGAAGTTCCTCTCGCCGTGGCTCTGGTGCACGACACGTGATTTCTCCAACAGGTAGTTAATGATGTGACCTCCTACGGGAGCGCCCTGCCAACGGGGACACCCAAAGGGAGAAGCAGAGGGGATAATACCGGGTTTCTGACACGCATGCAAACACGCATAATGTCACAGACAAACAGGTAAAGGTGGATGCAGCCAAATCCCCAAAACCAAGGAGAGCATTGTGAGGGTAAAAGGTGTATCGACAGAAGGTGGATCACAGCAACGGAGAGGTGAGCTTTGTTTGATCACTTAATGACGATCACATTGCAATAACAACACGCGAGTGAACTCACCTTGAAGTCGAACTGAATGTCCATGTATTTCCCAAAGCGACTGGAATTGTCATTCCGTAGAGTTTTTGCATTACCAAAACCTCCAGCACAGGGTTGGATTGTAGCAGGCGGTCTTTGACGGTCTGCACATGCTCGCTGGCAGGGCAGGTGACGGCGTAGTACTGCAGAACCTTTTTGGAGGCCTCGGTCTTGCCAGCACCGCTCTCACCGGAGATGAGGATGCACTGATCCCGTCTCTCGGTCCGCATGGAGCGATACGCATTATCAGCAACGGCATAACTGAACAGAGAATGTGTcaattgtttttaagaaattaaatcagtaaatgtatttttacatgaaaatgttattaaattataattaaaatgtatatttataatgtttaaaatatttactattttattatttccatttagTTATTCTATTAAGCTGTTATTTCTATCACAGTACATGAATTTGTGCATGCCCTTAAAATTTTGAATAATCTTTCTGGTTCTTATAGGCAGAGTTTCATAAACAGGGCTTAGTCGGGACTAGAcctaagttaaataaaaatatttaagcaatttttacataaatgccTTAGAAAACATCTTGACAcagaa

Function

symbol description
myo1c Enables signaling receptor binding activity and small GTPase binding activity. Involved in several processes, including positive regulation of cell migration by vascular endothelial growth factor signaling pathway; positive regulation of protein targeting to membrane; and positive regulation of vascular endothelial growth factor signaling pathway. Located in several cellular components, including basal plasma membrane; lateral plasma membrane; and microvillus. Part of filamentous actin.

NR:

description
PREDICTED: unconventional myosin-Ic-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158074 True 1070 lncRNA 0.43 2 15355189 15356673

Neighbor

gene id symbol gene type direction distance location
prpf8 prpf8,LOC107685080,LOC107589708,LOC107548576,LOC107743637,LOC107756948,LOC107669735 coding downstream 27475 15315385 ~ 15327714 (-)
LOC122359496 rilp,LOC107548577,LOC107669761,LOC107756964,LOC107685078,LOC107589707,LOC107743716 coding downstream 40671 15306452 ~ 15314518 (-)
scarf1 scarf1,LOC107743638,LOC107589706,LOC107757362,LOC107683267 coding downstream 48874 15300081 ~ 15306315 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 coding downstream 59554 15287519 ~ 15295635 (-)
foxn1 LOC107669715,LOC107548559,LOC107743735,LOC107757374,LOC107685158,LOC107589739 coding downstream 76501 15266038 ~ 15278688 (-)
git1 git1,LOC107669736,LOC107548582,LOC107589711,LOC107685085,LOC106580798,LOC105889552 coding upstream 46240 15402913 ~ 15423223 (-)
ssh2a LOC107743631,LOC107669738,LOC107548585,LOC107756773,LOC107685086 coding upstream 91836 15448509 ~ 15471865 (-)
slc6a4a slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107685089,LOC107589714 coding upstream 123832 15480505 ~ 15495244 (-)
blmh blmh,LOC107548589,LOC107743628,LOC107669757,LOC107589715,LOC107685090,LOC107756769 coding upstream 140130 15496803 ~ 15511275 (-)
polr1g LOC107669720 coding upstream 220468 15577141 ~ 15579336 (-)
G106994 NA non-coding downstream 55573 15299294 ~ 15299616 (-)
G106961 NA non-coding downstream 110276 15244533 ~ 15244913 (-)
G106993 NA non-coding downstream 116841 15238105 ~ 15238348 (-)
G106992 NA non-coding downstream 121438 15233422 ~ 15233751 (-)
G106991 NA non-coding downstream 125023 15229927 ~ 15230166 (-)
G107034 NA non-coding upstream 33567 15390240 ~ 15394077 (-)
G107053 NA non-coding upstream 117787 15474460 ~ 15476481 (-)
G107055 nova2,LOC107669728,LOC107589717,LOC103039352,LOC107685091,LOC107548550 non-coding upstream 175408 15532081 ~ 15652810 (-)
LOC122359369 NA non-coding upstream 259445 15616118 ~ 15618605 (-)
G107073 LOC107756729,LOC107589721,LOC107685095,LOC107548592 non-coding upstream 303387 15660060 ~ 15660932 (-)
LOC122359058 dph1,LOC107585615,LOC107664954,LOC107685060 other downstream 1032750 14298251 ~ 14322439 (-)
mmp20a NA other downstream 1345903 14003741 ~ 14009286 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other downstream 1429462 13908806 ~ 13925727 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other downstream 1449695 13883920 ~ 13905494 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other downstream 1473495 13878585 ~ 13881694 (-)
G107064 eml2,LOC107669753,LOC107548590,LOC107743713,LOC107685092 other upstream 419835 15776508 ~ 15782011 (-)
xaf1 LOC107714184,LOC107578343 other upstream 550689 15907362 ~ 15910474 (-)
ly6d si:ch211-207n23.2,LOC107587620,LOC107683433,LOC107666183 other upstream 598336 15955009 ~ 16063740 (-)
LOC122359003 LOC107714165,LOC107588126 other upstream 1055963 16412636 ~ 16426414 (-)
msi2b msi2b,msi2,LOC108425902,LOC107682662,LOC108435815,LOC108277875,LOC107587484,LOC105028669,LOC106603292 other upstream 1194518 16551191 ~ 16762064 (-)

Expression


Co-expression Network