G106571 (lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584)


Basic Information

Item Value
gene id G106571
gene name lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13883920 ~ 13905494 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU157458
CGCGCTCCCGTGCCGTAGAGGCGAATGCGGCGCTGCAAGGAGCAGACCCCAAGACTCCAGCCCCCCTTTTCAACACGAAAATAACACTTATTCCGTTCTCTACCGGTGTCTTCTGAGGAATAACCTTCAGTGCTGACTCTGTAGGATGCAGGGAGCGACTGCTTGGTAGATGCCTGCAGGCTGTCAATGCGTGGTGTTCCTGGAGACTGAATTTAAGGAGAAGTGTTTGGGGTGAGCTGCTGACCACCCTGCAAGCCGGACCCGGCGTCCTATCTCTGATCTCCTGCCAAGGAGACAGCAGTTGCTGCAAACTCTACACCTGACCCCCGCCCCCACCCCGTCCCATCCCCGCCGTCGCCACCATGGTGCTGTCACAGAGGCAACGTGATGAGCTaaaccGAGCGATAGCTGATTACCTTCGTTCCAATGGATATGAAGAGGCATATTCAGTTTTCAAAAAGGAGGCGGAATTAGACATGAATGAGGAATTGGATAAGAAGTATGCGGGTCTACTGGAAAAGAAATGGACTTCAGTCATCAGATTACAGAAAAAGGTGAtggaattagaatcaaaactgaATGAGGCAAAAGAAGAGATTACTTTAGGTGGACCAGTTGGACAGAAGCGAGACCCCAAAGAATGGATTCCCCGTCCTCCTGAGAGATACGCCTGAGCGGTCACAGGAGTCCTGTCACCAGAGTCATTTTCCATCCTGTTTTCAGCGTCATAGTTTCTGCCTCAGAGGACGAACGATAAAGGTATGGGACTATGAAACGGGCGACTTTGAGCGGACCCTAAAGGGCCACACAGACTCTGTGCAGGACATCTCCTTTGATCATACTGGAAAGCTGCTAGCCTCCTGTTCAGCGGACATGACCATTAAGCTGTGGGACTTCCAGGGCTTCGAGTGTATCAGGACA

Function

symbol description
pafah1b1 Enables dynein complex binding activity. Involved in several processes, including adult locomotory behavior; microtubule cytoskeleton organization; and nervous system development. Located in several cellular components, including kinetochore; microtubule cytoskeleton; and nuclear envelope. Part of microtubule associated complex. Implicated in lissencephaly and lissencephaly 1. Biomarker of hepatocellular carcinoma and schizophrenia.

NR:

description
PREDICTED: lissencephaly-1-like protein A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157458 True 921 TUCP 0.51 6 13883920 13905494

Neighbor

gene id symbol gene type direction distance location
LOC122358517 plekhg2,LOC107586265,LOC107662784,LOC107657556,LOC107726101,LOC107729120 coding downstream 142069 13715585 ~ 13741851 (-)
LOC122359517 pipox,LOC107664955,LOC107585605 coding downstream 191291 13678485 ~ 13692629 (-)
appbp2 appbp2 coding downstream 309155 13565103 ~ 13574765 (-)
usp32 usp32,LOC107585566,LOC107683840,LOC107690434,LOC107601698 coding downstream 323009 13521693 ~ 13560911 (-)
si:ch211-167j9.5 si:ch211-167j9.5,LOC107683836,LOC107601741,LOC107585561,LOC107718298,LOC107690476,LOC107734097 coding downstream 362390 13514829 ~ 13521530 (-)
ccdc92ba si:dkey-54n8.4,LOC107664895,LOC107743748,LOC107685051,LOC107585587,LOC107744787 coding upstream 21297 13926791 ~ 13938370 (-)
tlcd2 tlcd2,LOC107664963,LOC107743747,LOC107585588,LOC107592621,LOC107744789,LOC107685052,LOC103028751 coding upstream 34861 13940355 ~ 13955616 (-)
hif1al LOC107744792,LOC107664924,LOC107743660,LOC107585591 coding upstream 77373 13982867 ~ 13995314 (-)
mmp20b mmp20b,LOC107743745,LOC107585621,LOC107664917 coding upstream 103930 14009424 ~ 14013067 (-)
tp53i13 LOC107664927,LOC107585595,LOC107743658 coding upstream 109468 14014962 ~ 14020759 (-)
G106572 LOC107664934,LOC107743664,LOC107585584,LOC103047044,LOC107744786,LOC107592620,LOC107690414 non-coding downstream 66040 13817388 ~ 13817880 (-)
G106561 NA non-coding downstream 85672 13785178 ~ 13798248 (-)
G106548 NA non-coding downstream 127760 13753322 ~ 13756160 (-)
G106541 NA non-coding downstream 214541 13667571 ~ 13669379 (-)
G106525 NA non-coding downstream 277023 13606184 ~ 13606897 (-)
G106588 NA non-coding upstream 66556 13972050 ~ 13976201 (-)
G106631 NA non-coding upstream 147930 14053424 ~ 14053535 (-)
G106633 NA non-coding upstream 153481 14058975 ~ 14059178 (-)
G106634 NA non-coding upstream 157078 14062572 ~ 14062837 (-)
G106635 NA non-coding upstream 160837 14066331 ~ 14066837 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other downstream 2226 13878585 ~ 13881694 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other downstream 132863 13744555 ~ 13751057 (-)
ercc2 ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444 other downstream 422817 13454482 ~ 13461103 (-)
LOC122359155 LOC107662800,LOC107729090,LOC107586245,LOC107586286 other downstream 1593868 12280291 ~ 12290052 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other downstream 1850326 12030648 ~ 12033594 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other upstream 3312 13908806 ~ 13925727 (-)
mmp20a NA other upstream 98247 14003741 ~ 14009286 (-)
LOC122359058 dph1,LOC107585615,LOC107664954,LOC107685060 other upstream 392757 14298251 ~ 14322439 (-)
G107064 eml2,LOC107669753,LOC107548590,LOC107743713,LOC107685092 other upstream 1871014 15776508 ~ 15782011 (-)
xaf1 LOC107714184,LOC107578343 other upstream 2001868 15907362 ~ 15910474 (-)

Expression


Co-expression Network