tlcd2 (tlcd2,LOC107664963,LOC107743747,LOC107585588,LOC107592621,LOC107744789,LOC107685052,LOC103028751)


Basic Information

Item Value
gene id tlcd2
gene name tlcd2,LOC107664963,LOC107743747,LOC107585588,LOC107592621,LOC107744789,LOC107685052,LOC103028751
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13940355 ~ 13955616 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258965.1
aaaaagttACACAAGCGTCAGGATTTTGTAACGCACAAAGCTACTATTTAATTGTTGCCACTCGTAGTTGAGCCACCAGTGTCTTCTTAGCTTTACACCGGACTGAACAAACCGAGCGCTGAAACAAAGagctcagttgttgtttttttatttacaaagatTGAATATTTTTGAATTACACAAGGACTCTACCAACAGTCGTATAGGTTTGGATTGCCGAAAgcgaaaatgaaataaatacaaacagtcgggatgcattttttaattgaataacaGATAAAACGCGTAACGGGTCTGGGTCGAGACGAGCGCGAGAGATTTGGGTAGTGACAAGAAAACAGAAGCGCGCGCTTAAAACATGGAGTTGAATTCAGTGATTTTGACAACTGGGCTTTCGGTAGGTTTTTTCAAATTGGTGAACTATGGGGTCGGCAAACTTCCCGTTGCCGAGACAGCTCAGAGGAACGTTTGGAAATGGAAAAACATCTCCACGTCTTTCGTGCACAGCCTCCTAACTGGAGTGTGGTCTGTGCTTTGtttttgcATGCATCCCCAGATGGCTGAGGATTTGATAGAAACATACTCCGTTTTCTCTCACGCCTTGGTATCTGTATCGATCGGGTACTTTATATATGACTTCTTTGATATGGTCCTCAACCAGAAGGTCAGTCATTCATGGGAGCTCCTTTTTCACCATGTAGTGGTGATCACCTGTTTCGGGATATCTGTGTTGACCTGTCGTTACGTGGGTTTTGCTGTGGTGGCTCTGTTGGTGGAGATCAATTCAATCTTTCTGCATTTGAGGCAAGTGCTCCGTATGGCCAACCTGGCCAAAAGTACTTTTTACCGCGTCAACAGCATGATAAACCTCGGCACCTACGTAGTGTTTCGCATCAACACTCTGGCCTGGATGACCCGCTGGCTGGTGCTAAATCGTGACCTCATCCCCCTGATCAGCTACACCATCGGCAGCGTGGGTCTGGCCATCATGACCGTCATGAACATCGTGTTGTTTTGCCGCCTGATGAGAAGTGACTTCATGAAGTCCAGCCGTGAGAAGGAAGTgaggaaagagaaggaaaaagaaatgtagGAAGAAAACTCTTGCCACTCCAGATTCAGCTCCAACCAAATCCGCTCTCATCGCCACCATTCCCAGACTTTTAGGAGAAAAGCTCCTTTCAACCTTCTGACTTCATTCCTGTAACACCCGACTGACTAGATCAACGTTTAGTCGTTTTAACTTCATCTCATGTAGACCTCAAGCTGTGCTAAGATTTTTATGATGGCTATTGTTTGTCACAGGTTTACAAATGTCTGACGGGCATGacatatatttacacatgcAACCTTGTGCACAAATACTCCTGCATGATTTATACAATGACTCAAAACGTTATGAGTTCTAATGAACTGGATCTGTTTACCTTTATCAAATCATATGCTATCCCATGTAATGTATACATTGTGTATTAAATGTAAGCAAATATTCAGCTGAAATAAGTACTGTATatgtagaatttaaaaaaaatgaataacacatacatacatacaaacacacacacacacatatatatgtgtgtatatatgtaatgtgtgtgtgtgtgtgtgtgtgttatttgtaACCTAAATAGCATGACAGCATTTTGATTGAatttaattggaatgcacaatgaagtAACATAAATTGTTAAAAGTGGAGTTATCTGTTTTTCCAGATGAAGTGAAATCAAGTTCTAATgaactcacagacacacacacacacacatatgcgtAAGTTTTGGTGCATTGTAGCAGTATCTTCCTAATTCTATGTAGTTTTTAAATGGACAGTTCACTCtaatgaaaaaagttatttcttctgtggaacataaccGTAGATGTTTTGTTCTCGCTGCTCGTTTTCCGTACATTGTTGGTGAATGATGACACAGGCTgtcattttccaaaaacaacatgaacGTACTGTAACTTTTGAAGCCATATGACATAATTCATATTTGgttgaactgtctctttaaatctgATGGCAttagatataattttttagTTGGAATTCTCTCTCTGCTGACTAGTGACAACAAATGAAGTCACCATGAACAGCGTGTGCTCAGAGTTCACTACTGGATAGGGTCTGATTTAATTTGCTAAACGTGACTAGTTTTATGATGAATACCACTGCTCTCAGTTGATCTGTTGCCCTTTAAGTGGAGAATCTGAATCTCATTGCTGGAGTCTTTCACAGCGGCTATCAGGATTAAAACACTCCTGctctctttcttgtttttttggtttgtttgtttggtttgggggtttttttcataatgaaaaagaacaatgcatttGAGGTTAGAGATCCGACA

Function

symbol description
tlcd2 Predicted to be involved in several processes, including membrane assembly; phospholipid homeostasis; and regulation of membrane lipid distribution. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TLCD2 (TLC domain containing 2).

NR:

description
PREDICTED: TLC domain-containing protein 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258965.1 True 2363 mRNA 0.40 4 13940355 13955616

Neighbor

gene id symbol gene type direction distance location
ccdc92ba si:dkey-54n8.4,LOC107664895,LOC107743748,LOC107685051,LOC107585587,LOC107744787 coding downstream 1985 13926791 ~ 13938370 (-)
LOC122358517 plekhg2,LOC107586265,LOC107662784,LOC107657556,LOC107726101,LOC107729120 coding downstream 198504 13715585 ~ 13741851 (-)
LOC122359517 pipox,LOC107664955,LOC107585605 coding downstream 247726 13678485 ~ 13692629 (-)
appbp2 appbp2 coding downstream 365590 13565103 ~ 13574765 (-)
usp32 usp32,LOC107585566,LOC107683840,LOC107690434,LOC107601698 coding downstream 379444 13521693 ~ 13560911 (-)
hif1al LOC107744792,LOC107664924,LOC107743660,LOC107585591 coding upstream 27251 13982867 ~ 13995314 (-)
mmp20b mmp20b,LOC107743745,LOC107585621,LOC107664917 coding upstream 53808 14009424 ~ 14013067 (-)
tp53i13 LOC107664927,LOC107585595,LOC107743658 coding upstream 59346 14014962 ~ 14020759 (-)
taok1a taok1a,LOC107585593,LOC107664926,LOC107743657,LOC107744793,LOC107592626,LOC107685056,LOC108425880 coding upstream 65882 14021498 ~ 14041149 (-)
LOC122359057 dph1,LOC107664954,LOC107685060,LOC107585615 coding upstream 221924 14177540 ~ 14252042 (-)
G106572 LOC107664934,LOC107743664,LOC107585584,LOC103047044,LOC107744786,LOC107592620,LOC107690414 non-coding downstream 122475 13817388 ~ 13817880 (-)
G106561 NA non-coding downstream 142107 13785178 ~ 13798248 (-)
G106548 NA non-coding downstream 184195 13753322 ~ 13756160 (-)
G106541 NA non-coding downstream 270976 13667571 ~ 13669379 (-)
G106525 NA non-coding downstream 333458 13606184 ~ 13606897 (-)
G106588 NA non-coding upstream 16434 13972050 ~ 13976201 (-)
G106631 NA non-coding upstream 97808 14053424 ~ 14053535 (-)
G106633 NA non-coding upstream 103359 14058975 ~ 14059178 (-)
G106634 NA non-coding upstream 106956 14062572 ~ 14062837 (-)
G106635 NA non-coding upstream 110715 14066331 ~ 14066837 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other downstream 14628 13908806 ~ 13925727 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other downstream 34861 13883920 ~ 13905494 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other downstream 58661 13878585 ~ 13881694 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other downstream 189298 13744555 ~ 13751057 (-)
ercc2 ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444 other downstream 479252 13454482 ~ 13461103 (-)
mmp20a NA other upstream 48125 14003741 ~ 14009286 (-)
LOC122359058 dph1,LOC107585615,LOC107664954,LOC107685060 other upstream 342635 14298251 ~ 14322439 (-)
G107064 eml2,LOC107669753,LOC107548590,LOC107743713,LOC107685092 other upstream 1820892 15776508 ~ 15782011 (-)
xaf1 LOC107714184,LOC107578343 other upstream 1951746 15907362 ~ 15910474 (-)
ly6d si:ch211-207n23.2,LOC107587620,LOC107683433,LOC107666183 other upstream 1999393 15955009 ~ 16063740 (-)

Expression


Co-expression Network