RNA id: XM_043258965.1


Basic Information

Item Value
RNA id XM_043258965.1
length 2363
RNA type mRNA
GC content 0.40
exon number 4
gene id tlcd2
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13940355 ~ 13955616 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaagttACACAAGCGTCAGGATTTTGTAACGCACAAAGCTACTATTTAATTGTTGCCACTCGTAGTTGAGCCACCAGTGTCTTCTTAGCTTTACACCGGACTGAACAAACCGAGCGCTGAAACAAAGagctcagttgttgtttttttatttacaaagatTGAATATTTTTGAATTACACAAGGACTCTACCAACAGTCGTATAGGTTTGGATTGCCGAAAgcgaaaatgaaataaatacaaacagtcgggatgcattttttaattgaataacaGATAAAACGCGTAACGGGTCTGGGTCGAGACGAGCGCGAGAGATTTGGGTAGTGACAAGAAAACAGAAGCGCGCGCTTAAAACATGGAGTTGAATTCAGTGATTTTGACAACTGGGCTTTCGGTAGGTTTTTTCAAATTGGTGAACTATGGGGTCGGCAAACTTCCCGTTGCCGAGACAGCTCAGAGGAACGTTTGGAAATGGAAAAACATCTCCACGTCTTTCGTGCACAGCCTCCTAACTGGAGTGTGGTCTGTGCTTTGtttttgcATGCATCCCCAGATGGCTGAGGATTTGATAGAAACATACTCCGTTTTCTCTCACGCCTTGGTATCTGTATCGATCGGGTACTTTATATATGACTTCTTTGATATGGTCCTCAACCAGAAGGTCAGTCATTCATGGGAGCTCCTTTTTCACCATGTAGTGGTGATCACCTGTTTCGGGATATCTGTGTTGACCTGTCGTTACGTGGGTTTTGCTGTGGTGGCTCTGTTGGTGGAGATCAATTCAATCTTTCTGCATTTGAGGCAAGTGCTCCGTATGGCCAACCTGGCCAAAAGTACTTTTTACCGCGTCAACAGCATGATAAACCTCGGCACCTACGTAGTGTTTCGCATCAACACTCTGGCCTGGATGACCCGCTGGCTGGTGCTAAATCGTGACCTCATCCCCCTGATCAGCTACACCATCGGCAGCGTGGGTCTGGCCATCATGACCGTCATGAACATCGTGTTGTTTTGCCGCCTGATGAGAAGTGACTTCATGAAGTCCAGCCGTGAGAAGGAAGTgaggaaagagaaggaaaaagaaatgtagGAAGAAAACTCTTGCCACTCCAGATTCAGCTCCAACCAAATCCGCTCTCATCGCCACCATTCCCAGACTTTTAGGAGAAAAGCTCCTTTCAACCTTCTGACTTCATTCCTGTAACACCCGACTGACTAGATCAACGTTTAGTCGTTTTAACTTCATCTCATGTAGACCTCAAGCTGTGCTAAGATTTTTATGATGGCTATTGTTTGTCACAGGTTTACAAATGTCTGACGGGCATGacatatatttacacatgcAACCTTGTGCACAAATACTCCTGCATGATTTATACAATGACTCAAAACGTTATGAGTTCTAATGAACTGGATCTGTTTACCTTTATCAAATCATATGCTATCCCATGTAATGTATACATTGTGTATTAAATGTAAGCAAATATTCAGCTGAAATAAGTACTGTATatgtagaatttaaaaaaaatgaataacacatacatacatacaaacacacacacacacatatatatgtgtgtatatatgtaatgtgtgtgtgtgtgtgtgtgtgttatttgtaACCTAAATAGCATGACAGCATTTTGATTGAatttaattggaatgcacaatgaagtAACATAAATTGTTAAAAGTGGAGTTATCTGTTTTTCCAGATGAAGTGAAATCAAGTTCTAATgaactcacagacacacacacacacacatatgcgtAAGTTTTGGTGCATTGTAGCAGTATCTTCCTAATTCTATGTAGTTTTTAAATGGACAGTTCACTCtaatgaaaaaagttatttcttctgtggaacataaccGTAGATGTTTTGTTCTCGCTGCTCGTTTTCCGTACATTGTTGGTGAATGATGACACAGGCTgtcattttccaaaaacaacatgaacGTACTGTAACTTTTGAAGCCATATGACATAATTCATATTTGgttgaactgtctctttaaatctgATGGCAttagatataattttttagTTGGAATTCTCTCTCTGCTGACTAGTGACAACAAATGAAGTCACCATGAACAGCGTGTGCTCAGAGTTCACTACTGGATAGGGTCTGATTTAATTTGCTAAACGTGACTAGTTTTATGATGAATACCACTGCTCTCAGTTGATCTGTTGCCCTTTAAGTGGAGAATCTGAATCTCATTGCTGGAGTCTTTCACAGCGGCTATCAGGATTAAAACACTCCTGctctctttcttgtttttttggtttgtttgtttggtttgggggtttttttcataatgaaaaagaacaatgcatttGAGGTTAGAGATCCGACA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157459 lncRNA downstream 122475 13817388 ~ 13817880 (-) True G106572
TU157448 lncRNA downstream 142107 13785178 ~ 13798248 (-) True G106561
TU157430 lncRNA downstream 184195 13753322 ~ 13756160 (-) True G106548
TU157412 lncRNA downstream 271130 13667571 ~ 13669225 (-) False G106541
TU157480 lncRNA upstream 16434 13972050 ~ 13976201 (-) True G106588
TU157497 lncRNA upstream 50435 14006051 ~ 14006319 (-) False mmp20a
TU157542 lncRNA upstream 97808 14053424 ~ 14053535 (-) True G106631
TU157544 lncRNA upstream 103359 14058975 ~ 14059178 (-) True G106633
TU157545 lncRNA upstream 106956 14062572 ~ 14062837 (-) True G106634
XM_043258964.1 mRNA downstream 1985 13926791 ~ 13938370 (-) True ccdc92ba
XM_043259145.1 mRNA downstream 14628 13908806 ~ 13925727 (-) True cluha
XM_043259455.1 mRNA downstream 189298 13744555 ~ 13751057 (-) True LOC122359192
XM_043258354.1 mRNA downstream 198504 13715585 ~ 13741851 (-) True LOC122358517
XM_043259907.1 mRNA upstream 27251 13982867 ~ 13995314 (-) False hif1al
XM_043259909.1 mRNA upstream 27251 13982867 ~ 13990829 (-) True hif1al
XM_043259911.1 mRNA upstream 48125 14003741 ~ 14009286 (-) True mmp20a
XM_043259910.1 mRNA upstream 53808 14009424 ~ 14013067 (-) True mmp20b
XM_043259457.1 mRNA upstream 59346 14014962 ~ 14020759 (-) False tp53i13
TU157450 other downstream 14648 13920069 ~ 13925707 (-) False cluha
TU157458 other downstream 34861 13883920 ~ 13905494 (-) True G106571
TU157457 other downstream 58661 13878585 ~ 13881694 (-) True G106570
TU157426 other downstream 191146 13747036 ~ 13749209 (-) False LOC122359192
XR_006252707.1 other downstream 479252 13455981 ~ 13461103 (-) False ercc2
TU157568 other upstream 342728 14298344 ~ 14322397 (-) False LOC122359058
TU158145 other upstream 1820892 15776508 ~ 15782011 (-) True G107064
XR_006252641.1 other upstream 1951746 15907362 ~ 15910474 (-) False xaf1
XR_006252671.1 other upstream 2459491 16415107 ~ 16426389 (-) False LOC122359003
XR_006252653.1 other upstream 2595666 16551282 ~ 16762063 (-) False msi2b

Expression Profile