RNA id: TU157480


Basic Information

Item Value
RNA id TU157480
length 4091
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G106588
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13972050 ~ 13976201 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caactttattgtcaaatatgctctatgtacaacatacagcacagatgaaatttcttcccttctgaccttgcaaacatgcagaataagagataaaagaataaaaactaaagtataataaaataatggtaaagtatctaaaatataaatagtgcaacattaaatatacagacattaaacatacagacaaggcacttgttggaatattaaattaaattaaagtgaggTAGTGTGTTGAGGTGCAAGATGTGTAGACTCTGAGATTATGAGTTTATGTGGGGGGCGGGATCACAGTCTGAGGTCTGAGGCCTGAGGCAGGGGCCAGAGGTAGAGGTGAGTGAAGGGAGAGTAGGTAGGGAGTCGAGTCTCCTGACTGCCTGGTGGATGAAACTGTCCCTGAGCCTGCTGGTTCTGGCTCGGAGACTCCGCAGTCTCTTCCCCGACGGCAGCAGGTTGAAGAGGCAGTGAGATGGGTGGGTGGGGTCCCCTGCTATCCTGGTGGCTTTGCGGGTGAGACgagcattaaaaatgtccaagagaggggggaTATTTATATAAGTTTGGAAGTACtggggggtgagtaaatgatgacagaatgtatttattttttaattatctaaTGTTATAACGTAAGGCTGTTGAACcataacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaattcacgaaaattattttttaaaatgtaattaaaaaaagaagataaagtttatttatatagatatcATTATTTTACCATAATACATTAGTTCACTGAAAGTACTTTCCCAGTTCACATCATCTATTTATCTATGGACATGTCATCCAAAATGATTCatgatatatttatgttcatCTCAAGAGCAAAATCATACAACCACAACTGACTTGAGTGAAATGAAGGAGCCACAAGACgttgttttaaaaactgtatttggaaaaaaaaaaaaaatcagtttaaagtCCATTTTACCACCAGTAAAAATTCACATATTTTAGAGGGAACTCCAACGGCTGTGcatcaaaaatgacaatacttagaaataaaaagatgttgaagatgagatatatatatatataaaagatgatTAGTCTGTCAGTCTAAACGGGTCTGTCAGATATGAGGGAACATCAAGATCATGCACAAAGATCAAGTTTCTTTAAAACTATCTACATGAtgaagaaaagaacattttttgaaaaatacagtGCAAGATTAATCAGAAACCTATTAGGCTTAAAATATGTCAACAGCAGAATGTGGGCAATCCATTAGGATTTAATGCAGTGACAATCTGAAACACAGACTAAATGAGAAAAGTGAAAGCcatattataatacaatgtaCCCTTCCAGAGAGCATTTGCAGTACTGTTTGTGAGCACCACATGAGGAACAAAATTGGAAACAGAACACAGAAAAGCAGATCATTATCTTACCACATGAAAGATCATGCTCTGATCGGCCCTGGGAATGCAATTCAGAAAATAGAGAAGCAGTTTCTGAAAGCTATTCAACACGTTCAGCGGACCAGTCTTTTGAGAAAGTGATGCATTAGGCAATTTTCTCTCATCCATTCACCCCAAATAAGGCTTGTGGTATCCTCTTTATAAACAGCCAATAATCATTAAACATTAGCAGATGAATTTAAATGTGTGGCTGGTCACAAATCAAGTGGCATACTGTGGAGAGTGTGTTCAGTTTCAGTTCTGCATCAAAGATGCATAAAGgcgttttttttctgtttgtatgaATGCTAACCTCATCTGTTGTTTCAGTGCACTGAGGAGGTCAAACAACTATACAATACCTATAAACTTTATCCTGTcaactgcattatttattcatctctgaatatacatttaaatgtgtgtacatGCTTTCTTCCAATGCCTgattgtcattatttttgtttcacctCCTGAAAAAGTAACAATTCCAGTatgcataaaaaacaaacaaaaaaaacttttactggtggaaaaaacaaacaaacaaattctagtagtatttttatattaataacgTCTGTCAATAATGGTCATTAATTTTCTCAAACCTTCACATCTACAATTAGAGTTATGTTTAGGCTCTcagcaaaagaaaacaacttttagaaacACATAAGCTACCGTTTCAGTCTAGCATTAATCTCTACAATTCATCTTCAAACGTTTTGTAAATTACCGAATGTAAATGACCTCGATCTTCTCACAAACGTGTATCAACTCTCATTAATGATCAGCTAGTATTCACATTTAGAGTCACTACACGTATCcgattaatttttaaatggccttttttttcatatatttttcagttttcccCATCCACTTTGGTCCTGGATCTTTGTGACTGAGCAAGGAAAGATAAAGTCTTACAAAGGACAGTTaacccaaaatataaaattctgccaatatttactcacccttgtgccGTGTCAGACCTATATGACTTCTGTGCAACATGATGCCCTTTTTAAAAAGGGCCAAAACAACACTAAGAAGAAAGGACGCTACACAGGTAATGAGGGTTAATAAATGGTAACAGAATTTTCCAATCTGGGTAAACACTCCTTTAAAGTGATGTAGTGTACTCGGactaattagtattattaaccTTCAGTATTTCAAACAGTCTTTGGTTGTTCCACTACTCCTCTCTTATTCCTTGAATGTCATGTTGCTCTTATATCAAAACATTGTAGTTTACATGACCAATTACATGACTACTATGGcctacatttaaatgtgtggGATCAATCTCGATCTGTATCTATATGGTCCACCTCCTTTGAATAAGCTCTCAAAGTAGAGCATATGTAACGCTCACCTATACATTCGTATAGTTCAACATCTCTCAGACAAAAATCAACCACAATGAATCCGTCGGAGAAAGGCCACGATACTTCAAAGATGTAAGCTTCTTAGCTGGAGGATTTGGGTGCACATGAAAGGACAGGCTGCCCTACATTGAAAACAACTCGGCCTCTTCAGCTAATGTGGCGTGGCGCCGTGGTGAaagttttgtgaaaaaaaaaactaacaaaaaaaaaaaaaaaaaaaaaaccaccctACATCCAACCCTTCCCCCTttattatataagaaaaaaaaaatggaacaatGAATCAAAGGAGGAAGTTGCATATTCGAGTGCAGCTTAATCTCAGAACAGTGTTTAAAACAATCACACTGTCACTCAAAATGCAATATGAAAACCAATATAACGCTCtactttcattaaaacaaaattaaaaacggtctggaaaaaaatgaacaaaaagtaaaGCCTCCAGTGTTTACCATTGCTTAGTGTTGTAACAGGAGCCTAGAGtttcattttttaagtaaaaggTTTTCTTCAGTAGTTGTTTTCCCTGTTAAAAATGGATTAATGAGTAGTGTGGTCATGGTGCAAAAGATGAagtgcaggggaaaaaaagcttgaGGTTTGGAACAAATCCATAAAATTGTTGCTTTACATTGAGGGCAGATTAGAATCTCCTAGTggttcattttcataaatgtctAAACCTCCTTAACTCAGTTCAATCAAAAGCACAATCTTAGAGGTCAGACGTGAAACCACAGAGGACACACGTTCCTGTGTTTCTGAATTAGCCAGAGAGGGAAACCTCTTATAGCAGAACACTGTGAAGGATCTAATCATGTCTATTTCGTGTCACCAAATTTGATGTATTCTAGTGTAATAAAAACAGTGGTAAAAAtgtttggggggaaaaaaaccctcTTAATGTCCATAGCATCAATGGCCTTTCCTCCTAAAAGTCTTGACCTGTACAATCATTTCAGATGTTTAAACTGTGCAGAGTACGGACTCCATCTTTGCATTTGGGTCTTTGCTTTGAGCTCAGAGGGCCTAAAAGATCCCGCACCGATTTCTCTTCTCATCTCATGCGGTTTTGTCTCATGAGGGGAACAATGCAAGAGGGAGGGCCCGCTTTACTCAGGAAGGGATGCTTTAGCAGCTCTTGAGCTGTGGCCCTCTGGGCAGGATCTCGTACGAGCATCCTGTCCAAAAAACCCTTTAGAAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157459 lncRNA downstream 154170 13817388 ~ 13817880 (-) True G106572
TU157448 lncRNA downstream 173802 13785178 ~ 13798248 (-) True G106561
TU157430 lncRNA downstream 215890 13753322 ~ 13756160 (-) True G106548
TU157411 lncRNA downstream 302825 13667571 ~ 13669225 (-) False G106541
TU157497 lncRNA upstream 29850 14006051 ~ 14006319 (-) False mmp20a
TU157542 lncRNA upstream 77223 14053424 ~ 14053535 (-) True G106631
TU157544 lncRNA upstream 82774 14058975 ~ 14059178 (-) True G106633
TU157545 lncRNA upstream 86371 14062572 ~ 14062837 (-) True G106634
TU157546 lncRNA upstream 90130 14066331 ~ 14066837 (-) True G106635
XM_043258965.1 mRNA downstream 16434 13940355 ~ 13955616 (-) True tlcd2
XM_043258964.1 mRNA downstream 33680 13926791 ~ 13938370 (-) True ccdc92ba
XM_043259145.1 mRNA downstream 46323 13908806 ~ 13925727 (-) True cluha
XM_043259455.1 mRNA downstream 220993 13744555 ~ 13751057 (-) True LOC122359192
XM_043258354.1 mRNA downstream 230199 13715585 ~ 13741851 (-) True LOC122358517
XM_043259907.1 mRNA upstream 6666 13982867 ~ 13995314 (-) False hif1al
XM_043259909.1 mRNA upstream 6666 13982867 ~ 13990829 (-) True hif1al
XM_043259911.1 mRNA upstream 27540 14003741 ~ 14009286 (-) True mmp20a
XM_043259910.1 mRNA upstream 33223 14009424 ~ 14013067 (-) True mmp20b
XM_043259457.1 mRNA upstream 38761 14014962 ~ 14020759 (-) False tp53i13
TU157450 other downstream 46343 13920069 ~ 13925707 (-) False cluha
TU157458 other downstream 66556 13883920 ~ 13905494 (-) True G106571
TU157457 other downstream 90356 13878585 ~ 13881694 (-) True G106570
TU157426 other downstream 222841 13747036 ~ 13749209 (-) False LOC122359192
XR_006252707.1 other downstream 510947 13455981 ~ 13461103 (-) False ercc2
TU157568 other upstream 322143 14298344 ~ 14322397 (-) False LOC122359058
TU158145 other upstream 1800307 15776508 ~ 15782011 (-) True G107064
XR_006252641.1 other upstream 1931161 15907362 ~ 15910474 (-) False xaf1
XR_006252671.1 other upstream 2438906 16415107 ~ 16426389 (-) False LOC122359003
XR_006252653.1 other upstream 2575081 16551282 ~ 16762063 (-) False msi2b

Expression Profile