RNA id: XM_043259909.1


Basic Information

Item Value
RNA id XM_043259909.1
length 3331
RNA type mRNA
GC content 0.45
exon number 15
gene id hif1al
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13982867 ~ 13995314 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGGGAGCACTAGTGAAAGGCACTAAGTGAGGGCTTTCCCCCCTTCATTTTGAAAAGTTTATCTGGGACTCACTTTTTGGCAAGACCGGGACACAGAGAAAACCAGAACACACCAATTACAGCTGCGACAGTTTTATTGAGGACAAACAGAGTACAAGATGCCCAGTTTGGAGCAGCGGAAGGTGCGTTCTCGTGTCGCGGCGCGCTGTAGGAGGAGTCAGGAGACCGAGGTGTTTTACGAGCTGGCCCATTCACTACCACTTCCACGACGTATCGCCTCCCACCTGGACAAAGCTGCCATCATGAGGGTGACACTCAGCTATCTGCGCATGAACCGCTTGATCCAATCAGCGGGGCCAACCAAAACTCCGACTGAAGAAACTGAGAGTCCCACTGATGCCTTTTATCAGCAGGCACTGGCTGGCTTTATTCTGGTGATGACTGAGGAAGGGGACATGGTCTTCCTCTCAGAGAGTGTTAGCAAATACATCGGCATAACACAGCTGGAGCTGCTTGGACAGAGCGTGTATGAATTTGTTCATCCCTGTGACCAAGAAGAATTACGAGACATCCTCGCCACAAGACCTGGTGTTTCAAAGAAAAAGACGTCAAGTGAGAAGTCAACCGAACATAATTTTTTCCTTCGGATGAAGAGCACACTCACCCACACAGGAAGAACAGTTAATATCAAGTCTGCAACCTGGAAGGTTCTTCATTGCACAGGACACATACAGACGTTCAGCGGCGATGATGAGAACGGGCCCCCTGCTGGCAGCTTCCTGACTCTGCTGTGTGAACCCATTCCTCACCCCTCCAGCGTTGAATTCCCACTAGACAGCAGCACTTTCCTCACACGCCATAACATGGATTTGACTTTCACACAATGTGACGGACGAGTCACTGAGCTTGTTGGATACCAACCCGAAGATCTGATTGGCCGGTCTGCCTATGAGTTTTATCACGCCCTTGATTTTGATCACGTAACCAGGAGTTTACACATCTTGTTCTCCAAAGGCCAGGTGTGTACCAGCCAGTACCGCTTCCTGGCTAAGAATGGAGGATTCGTGTGGACTGAGACTCAGGCCACTGTCCTCTACAACAGCAGGACCTCTCAACCCGAGGCTGTGGTCTGCCTCAACTTTATCCTCAGTGGTGTAGAAGAGGCGGATGTTGTGTTCTCATTAGAACAGACCTCTGAGAAACCAAAGCCCAAAGCTGAGAAGCTGAACATGCTGAAGGAGGAGGTGGACTCAGACATGGAAGAGGACAGCAGCACGGCCAAACTCTTCCTCCAGATGAAGGAGAACCCTGAGGAGTTACTTCAGCTGGCACCTCATTCTGGAGACGCTGTCGTTTCCCTAACAGACTGTGTGGAGTTATCCTTCTGCTGTCCATCTACTCCCAACTCTGTCCCAGAATGCCCTCAGGACTTCTGTACACCTGAACTCCGTCAGCTCCTTTCTCCAATATTCGACAGGCCCACCAAATCTCCACCCACTGCTAGCCCCGCTGAAGAGCTGCCCATGGAGATGGAAGGAGTGGAGAAGTTTTTCGCCCTCAAACCAGAGGAGAGCGTAACTGTGAAAGGACAATCAGAGCCTATGGATGAGCTTGATTTGGACATGCTGGCTCCGTATATCTCCATGGATGATGACTTCCAGCTGACCTTCCTGCCCCAGGGTGAAATGGCTATACCGTCTGATATCCTGACCAGCACTTCAAGGAAACGACCTttggaagaagaggaggaggatgacATTCCTGTTCTGGCTGGTAAATGGGAGAAGAAACCGATGAGCGGCACCATAGAAGAACAGCTTCTGCTCAGCCACACATTACTGaatAGCTTGTCTGACGATGGCTCGGAAGAATTTGAACCCCCACCTCAAAAGCGAAGTCAGCTCTTAACCGACAGGGACCCGTTGCTGGGCGGAGCGCAGACGTTGTGTGATACAGCCGCTCTCATGAGGGACACCTTCCTGTCGCGTCCGCCGGACTTAAAGAGACCCGTTGCTGAAACAATGCCGTCCCTTACTTGAAGAGGGAACGGTGTGGACGGCTCATCAGCATTAACAAAGAGGGTTATGAATAACCCTCCTCACGCTCCACATGTATGAACGTAACATGTATTTCAGAGAGTGACCTTTTACGCACAGAACACAGGAGGACAATTGGCCTAGATACTCTGTCCATTACATATGTCAATATGtcaacaaatattattattattattaatttttttactattttaattttgtttttgcccAAATACTATAACCTAGAGTAGTGAAAATAGACTTGTAGCTAGTAGATTTAGTATAGTATAGTGATTGGTAATGAGTTCTCAACAGATTTGTCATTCAGCAGATTGCGACATttctaaaaattataataataatggtgcTCTGATCTTCCCTCGTTTTCTGCCGTTCAAGCCGAAATTCGTCCAAAGCACAAATGCGGCCAAATGGGGTTCGAAATCGAAGATATACTGGTCAGGATATGTTAGGAATAGTGTTAACGTGTTGTTCTACCACTTGTAGCCTTAATCTACACCTATATTCTCATAACTTCAAGCATAACCTCACTTGACCGTAAGATTATCTGGAAGAAGATTGAGGAGAGATTTCTTACAGCGGTTCTGTCTAGAATCATGGGTTAGAGCGGTGAAGGGCTGACTTTGAGTGGATGTGATCATGCTTTTGAGTTCGTAGATTATTCACTGAGGCCACAGCTGACAAACGCAACAAATACTCTATTGGTGATCAtctttttataaagcattttatatacttttgcAATTACGACTTGTAAGTGAATCTATACTTGTGTGTCTTCGGCGTTGAACTACAAATATCACTGTTTTCTGTTCTGTAATGGTTTTCAAAGAGGCTATGGTGTTGACGCTGCAGTCGTATTGACCGAAAACCTTGTCTGATGTCTTTTTGAATCCTAAGATGAGAGGCTAACACAGAAAATGTGCTAATCAGTTGGTTGAGAGCGTTCATGTTTGGTTTCAAGATCATCTTTAATGCAGcaaaggcagttttttttttaaattgtggcATACAGGATTAGTtaaggtgcttttttttttccatttgactGTGAATCAGATATATTCCCTTGATTTATGTAGCTAGTACAGACATAACTCAAGGGGCCTTATTCAAATGGTGTCCAATAAGACACATGCCTTTCTCATATGGATAAGTCCTTCAGATATCTTTAGACGTTTGTGTatattactttgtgtatttttgcatcatttatttcCAATGTACTTATACATTGTATTGAATGATAaaggaataaaacattttaaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157480 lncRNA downstream 6666 13972050 ~ 13976201 (-) True G106588
TU157459 lncRNA downstream 164987 13817388 ~ 13817880 (-) True G106572
TU157448 lncRNA downstream 184619 13785178 ~ 13798248 (-) True G106561
TU157430 lncRNA downstream 226707 13753322 ~ 13756160 (-) True G106548
TU157416 lncRNA downstream 313642 13667571 ~ 13669225 (-) False G106541
TU157497 lncRNA upstream 15222 14006051 ~ 14006319 (-) False mmp20a
TU157542 lncRNA upstream 62595 14053424 ~ 14053535 (-) True G106631
TU157544 lncRNA upstream 68146 14058975 ~ 14059178 (-) True G106633
TU157545 lncRNA upstream 71743 14062572 ~ 14062837 (-) True G106634
TU157546 lncRNA upstream 75502 14066331 ~ 14066837 (-) True G106635
XM_043258965.1 mRNA downstream 27251 13940355 ~ 13955616 (-) True tlcd2
XM_043258964.1 mRNA downstream 44497 13926791 ~ 13938370 (-) True ccdc92ba
XM_043259145.1 mRNA downstream 57140 13908806 ~ 13925727 (-) True cluha
XM_043259455.1 mRNA downstream 231810 13744555 ~ 13751057 (-) True LOC122359192
XM_043258355.1 mRNA downstream 251979 13715585 ~ 13730888 (-) False LOC122358517
XM_043259911.1 mRNA upstream 12912 14003741 ~ 14009286 (-) True mmp20a
XM_043259910.1 mRNA upstream 18595 14009424 ~ 14013067 (-) True mmp20b
XM_043259457.1 mRNA upstream 24133 14014962 ~ 14020759 (-) False tp53i13
XM_043259456.1 mRNA upstream 24133 14014962 ~ 14020759 (-) True tp53i13
XM_043258394.1 mRNA upstream 30669 14021498 ~ 14041149 (-) False taok1a
TU157450 other downstream 57160 13920069 ~ 13925707 (-) False cluha
TU157458 other downstream 77373 13883920 ~ 13905494 (-) True G106571
TU157457 other downstream 101173 13878585 ~ 13881694 (-) True G106570
TU157426 other downstream 233658 13747036 ~ 13749209 (-) False LOC122359192
XR_006252707.1 other downstream 521764 13455981 ~ 13461103 (-) False ercc2
TU157568 other upstream 307515 14298344 ~ 14322397 (-) False LOC122359058
TU158145 other upstream 1785679 15776508 ~ 15782011 (-) True G107064
XR_006252641.1 other upstream 1916533 15907362 ~ 15910474 (-) False xaf1
XR_006252671.1 other upstream 2424278 16415107 ~ 16426389 (-) False LOC122359003
XR_006252653.1 other upstream 2560453 16551282 ~ 16762063 (-) False msi2b

Expression Profile