RNA id: XM_043259455.1


Basic Information

Item Value
RNA id XM_043259455.1
length 2713
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC122359192
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13744555 ~ 13751057 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTAAACAGTTCGTAGAAGGTTTTTACTTGAACTGACAGGAACTTGACTTGAGTTTGTCTCTTGACAGGACCGATGGGTTCCAGGAGCAGGACACAGAGATCGACTGAACACACACCGCAGGAGCCAGGAGCCAGGAGTCTGACCAGGAAACAGAGGAGACAACTGGAACTGGAGAAGAACACGAAAGGTAAGTACAAGGTAAATACGAACATGCTTAAACTCAAAAGAGCGCCAGCAATAGTCCGATTCATTAGTAACAAGACTGGACACTGAGGGATCTGTGGTGTGTGCTTAAATACTGGTGCTGGTGTATCTGAATAGAACACGGTGTGCCTGTGTGCGTTGTGGTTAGCTGGTGGAGGAGCCTGGCTGATCTCTAACACAAGCCCTTTTGGTTAGGTTGGAGCCAGCCTTATCCATTTTTCTATGAGGTTGTGAGGGGGTTCAGTTTAATCCTATTCAATATACACTATATCCTTGAAgataaaaaatttgttttatgtatttaataaaatttacattaacatcAAATTTATActtactgcatgttttctgCCTTTATAGCAAATGTGTACAAGTCACGCTTAATGTACTAATCACTATGAAATGTTGCTGTGAAGTAGTTATTGTATGCACATAGATGTTTTACCTGTACATACTAGCACCACAGCTGCTGTGTCACCATTCCTTGAGACACGATACACAGCTGTCGAAAGTTGAGATGTTTTCAATGACAGTGTTGTCTTTGACTTTGTCTTTTACTCCTAAACATGATCAAGCTGCTCGTAATACTGAATGGTGCCTTATATTGCGATCCTGTGATAAGTGTGAAATTTCTTTTTAGGTACACATGGATCAGCTGAGCATTAGCTGGTACGAGCTTGACTAATGTGGCCCGCTAGAACTAAAGCTTGGTAATGAATCATTATGGTCGATATACAATATAAGAGAGCAGTAAACTTTGGTGGATTACATACCTCTCCTgtctataaaacatttaaattatcgAGGACACTGTTTGTCTACCAGGATTCGAACCCATCTCGACCATTGACAGGCCAAAACATGGCCCCCTTTTATGGAAGGGTTTTCCAGACTATTTTCAAATGGaattgcaaattgtatttttaactgCATTTCCAATATATGGACGCataaacatttcttgtttgATGGTACGAAAGACACAAGAATTGCAAGCTCATACAATGCAGTGATAAACAACAATTTTCCATTCTATACTATATTTAAAGTATGTCGACTCCTTATCAAAAACCATGCCAAGATTTACCATAACCGGACCAAGACTTATGTTTGCGCTCTAAAGAAGAGTAGAAACTCACTGTGGATTACACTGGGAAAGTGCCGCTCCACAGTGCTGTCCTACTGGAGTCGACTCTCTGCGCATGCGCTGAAATTGACCGCTCCGGTTGCTCCTGTTGTAAACAAGACGGTACAACAACAGTAAACGGTTTAATTTTGGCAGCTGGGAGTGAAGGCGCATTTTACCTGTTACGTACTGACTGTGGATATGAAAGGACAACAGAAAAGTTCTGAACCTGATGTCAATGTTCCAGTCATTGAAGAAGGGGCAGTTGCTACTGCAGAGGACCCATCAGCAATCACAACTATTCAGTCTGCTTCTACATTCTCCTCGGAGCAGCCGATTAAATACCTCTTCAAGACTGAGGGAGCTGGGGGGCAGGTAGGGGAGCTGTACCCTCCCTCAGGGCAGGTTACATATCGCGTAATCCAAGTTGCAGATGGACAGCTGGAAGCTCAAACTGACGGCGCAACAGCTGTTAGTGTAGTGACTGGGTTTCCTGCTACAACACAGCCTGTTACGCAGGCAGTTTTCTCTCAGTCAGAAGGCTTGGAGGGCGATGGCACAGAAACCCATTACACATACTATCCTGCTACTATCTCAGACGCAGCGGCTGGCACCATGGTGACCGGTGTTCAGGCCTCAGATGCTCTGCTCAGTCAAAGTGCTCCTGCAGGTCAGTTGTATGTTATGATGTCCCCGCAGGAGGTCCTTACTGGAGCCAACCAGAGGTCTATTGCACCTCGTACACAACCTTACAATGCTAAGTCGGGAACACAGCGTGGTTCCAGGGATGACAAGCGGAGGGCTCAGCACAATGAAGtgGAACGCAGACGGAGGGACAAGATCAACAACTGGATTGTCCAGCTTTCCAAAACAATCCCTGACTGCAACATAGATGCAACCAAAAATGGTCAAAGTAAGGGTGGGATCTTGTCCAAAGCGTGTGACTATATCCAAGAGATGCGTCAGAGCAATGCACGGCTGGAGGAGGAACTCAATACTGTGGAAAGACTGAGGATGGACAATCAGCTTCTCAAACAAGAGATGGAGGAGTGGAAATCAAAGAATCAGATGATCAGAGCCCAGTTAAGACAGCATGGCATAGTGGCAGCATCAATGGACTCTCAGTGAAGAACTGCAGATCAACTATAACCTTCTCCTGCTGTGGTCTTGTCATTAATTCCATTTATCcatgtttgaaatgacatgtaAGTCGTTCTTACTGTGGACAGTCACACtcttttctttgtcttcttcACGGTCCACTTCGCAAATAGCCTTtgattgtttcatattttttccaGAGTGGTCTGTTATTGTAACTGCACTGAAATGATGTATAATTGTCAGATCTGTATATTTGTAGATCTGTATTTAAAGAACGA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09106 USF; upstream stimulatory factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157408 lncRNA downstream 75176 13667571 ~ 13669379 (-) True G106541
TU157402 lncRNA downstream 75330 13667571 ~ 13669225 (-) False G106541
TU157430 lncRNA upstream 2265 13753322 ~ 13756160 (-) True G106548
TU157448 lncRNA upstream 34121 13785178 ~ 13798248 (-) True G106561
TU157459 lncRNA upstream 66331 13817388 ~ 13817880 (-) True G106572
TU157480 lncRNA upstream 220993 13972050 ~ 13976201 (-) True G106588
TU157497 lncRNA upstream 254994 14006051 ~ 14006319 (-) False mmp20a
XM_043258354.1 mRNA downstream 2704 13715585 ~ 13741851 (-) True LOC122358517
XM_043258356.1 mRNA downstream 12871 13715585 ~ 13731684 (-) False LOC122358517
XM_043258355.1 mRNA downstream 13667 13715585 ~ 13730888 (-) False LOC122358517
XM_043259847.1 mRNA downstream 51926 13678485 ~ 13692629 (-) True LOC122359517
XM_043259116.1 mRNA downstream 169790 13565103 ~ 13574765 (-) True appbp2
XM_043259145.1 mRNA upstream 157749 13908806 ~ 13925727 (-) True cluha
XM_043258964.1 mRNA upstream 175734 13926791 ~ 13938370 (-) True ccdc92ba
XM_043258965.1 mRNA upstream 189298 13940355 ~ 13955616 (-) True tlcd2
XM_043259907.1 mRNA upstream 231810 13982867 ~ 13995314 (-) False hif1al
XM_043259909.1 mRNA upstream 231810 13982867 ~ 13990829 (-) True hif1al
XR_006252707.1 other downstream 283452 13455981 ~ 13461103 (-) False ercc2
TU156053 other downstream 2238378 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 2387007 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 2412657 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 2439993 11303421 ~ 11304562 (-) False LOC122358622
TU157457 other upstream 127528 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 132863 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 169012 13920069 ~ 13925707 (-) False cluha
TU157568 other upstream 547287 14298344 ~ 14322397 (-) False LOC122359058
TU158145 other upstream 2025451 15776508 ~ 15782011 (-) True G107064

Expression Profile