LOC122358627 (vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524)


Basic Information

Item Value
gene id LOC122358627
gene name vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11353646 ~ 11357553 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU156138
GGAAGTGCGGGAGTTGTTTTACGGGCAAATATCCTTCCTGACTGCGGTCCTGCTGTAAATTAAAGCTACTTTAATTAAACCAGACAGAAATATGCATTAGATTTTGAgcgtaatatattatatatctcaACTGAATCGCGCGTGACAAAAAGTCAATTAGCCAATTCGCTTGTTTTTGAAGGCCACTTGTTAAGAGGTAACTATCGGAGCGCTAGGGAACCTGTAGCTGCTGTCAATCAGGTGATCTATGATCGTACGGCACTGAGACCGACACTCGTCCATCAGACATGAGCTTCTTCGGCTTCGGACAGACCGCTGAGATCGACATTGTGTTGAACGACGCCGAGACCAGGAAGAAAGCGGAGCACAAAACCGAAGACGGCAAAAAGGACAAATATTTCCTTTTCTACGATGGCGAAACTGTCAGTGGGAAAGTtaacgtgacactgaagactccCGGCAAAAGGCTGGAGCACTACGGGATCAAAATCGAGTTCGTCGGACAGATAGATATTTTCTGCGAGCAACAATCAGCAGAAGGCTAAATGATATCAGTAAAGAGATGGATATCGTCGTGCAGACGCTGTGCACGTATCCAGAGCTCAACTCCTCCATCAAGATGGAAGTAGGAATTGAAGATTGCCTCCATATTGAGTTCGAATACAACAAATCCAAATACCACCTGAGGGACGTTATCGTAGGCAAGATTTACTTCCTCCTTGTGAGGATAAAGATTAAACACATGGAGATCGATATAATAAAGCGGGAAA
>XM_043258503.1
ATCCAGGAAGTGCGGGAGTTGTTTTACGGGCAAATATCCTTCCTGACTGCGGTCCTGCTGTAAATTAAAGCTACTTTAATTAAACCAGACAGAAATATGCATTAGATTTTGAgcgtaatatattatatatctcaACTGAATCGCGCGTGACAAAAAGTCAATTAGCCAATTCGCTTGTTTTTGAAGGCCACTTGTTAAGAGGTAACTATCGGAGCGCTAGGGAACCTGTAGCTGCTGTCAATCAGGTGATCTATGATCGTACGGCACTGAGACCGACACTCGTCCATCAGACATGAGCTTCTTCGGCTTCGGACAGACCGCTGAGATCGACATTGTGTTGAACGACGCCGAGACCAGGAAGAAAGCGGAGCACAAAACCGAAGACGGCAAAAAGGACAAATATTTCCTTTTCTACGATGGCGAAACTGTCAGTGGGAAAGTtaacgtgacactgaagactccCGGCAAAAGGCTGGAGCACTACGGGATCAAAATCGAGTTCGTCGGACAGATAGAGCTGTACTATGACAGAGGAAACCACCACGAGTTCGTGTCGTTAGTGAAGGATCTTGCGCGACCCGGTGAGCTTTCACAGTCCCAGACCTTTGACTTTGAGTTCACCCATGTGGAAAAGCCCTATGAGTCTTACACTGGCCAGAATGTCAAACTGAGATATTTTCTGCGAGCAACAATCAGCAGAAGGCTAAATGATATCAGTAAAGAGATGGATATCGTCGTGCAGACGCTGTGCACGTATCCAGAGCTCAACTCCTCCATCAAGATGGAAGTAGGAATTGAAGATTGCCTCCATATTGAGTTCGAATACAACAAATCCAAATACCACCTGAGGGACGTTATCGTAGGCAAGATTTACTTCCTCCTTGTGAGGATAAAGATTAAACACATGGAGATCGATATAATAAAGCGGGAAAGCGACTGGAACAGGGCCCAGTGTGTATCAACGAAAACGATGACCATTGCCAAATATGAGATCATGGGCCGGGCGCCGACGCTGAAAGGCATTATTTTCTCGTGCACGTAA

Function

symbol description
vps26b Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26, retromer complex component B).

NR:

description
vacuolar protein sorting-associated protein 26B

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0015031 protein transport biological_process
GO:0030904 retromer complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156138 False 770 TUCP 0.44 3 11353841 11357548
XM_043258503.1 True 1042 mRNA 0.46 5 11353646 11357553

Neighbor

gene id symbol gene type direction distance location
si:ch211-213d14.1 LOC107701402,LOC107659945,LOC107717182,LOC107582659,LOC107713430,LOC107597593 coding downstream 161597 11187419 ~ 11192049 (-)
LOC122358618 LOC107713430,LOC107701402,LOC107659945,LOC107582659,LOC107717182,LOC107597593 coding downstream 166363 11185150 ~ 11187283 (-)
LOC122359110 LOC107717180,LOC107713465,LOC107597510,LOC107582585 coding downstream 168546 11179336 ~ 11185100 (-)
arhgap32a arhgap32a,LOC107713447,LOC107662764,LOC107582574,LOC107699902,LOC107597520 coding downstream 281136 11045951 ~ 11072510 (-)
ncam1b LOC107748595 coding downstream 498462 10773572 ~ 10855184 (-)
LOC122358470 NA coding upstream 174888 11532441 ~ 11533631 (-)
LOC122358629 NA coding upstream 182520 11540073 ~ 11541164 (-)
LOC122359552 NA coding upstream 187669 11545222 ~ 11546883 (-)
LOC122358630 NA coding upstream 195348 11552901 ~ 11554310 (-)
thyn1 thyn1,LOC107713442,LOC107699901,LOC107748590,LOC107597527,LOC107582572 coding upstream 215944 11573497 ~ 11575403 (-)
LOC122359088 NA non-coding downstream 27649 11325275 ~ 11325997 (-)
G105694 NA non-coding downstream 47132 11304983 ~ 11306514 (-)
G105674 pou2af1,LOC107582583,LOC107713464,LOC107717181 non-coding downstream 181907 11169121 ~ 11171739 (-)
G105653 NA non-coding downstream 324868 10969169 ~ 11028778 (-)
G105497 NA non-coding downstream 841383 10475572 ~ 10512263 (-)
LOC122358449 NA non-coding upstream 64301 11421854 ~ 11425407 (-)
LOC122358535 NA non-coding upstream 155093 11512646 ~ 11513531 (-)
LOC122358725 NA non-coding upstream 168313 11525866 ~ 11526684 (-)
LOC122358462 NA non-coding upstream 181359 11538912 ~ 11539834 (-)
LOC122358562 NA non-coding upstream 194700 11552253 ~ 11552751 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other downstream 11530 11326512 ~ 11342116 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other downstream 48836 11302230 ~ 11304810 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other downstream 690058 10658934 ~ 10663588 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other downstream 839584 10512631 ~ 10514062 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 1556723 9763871 ~ 9796923 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other upstream 485213 11842766 ~ 11855895 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other upstream 673095 12030648 ~ 12033594 (-)
LOC122359155 LOC107662800,LOC107729090,LOC107586245,LOC107586286 other upstream 922738 12280291 ~ 12290052 (-)
ercc2 ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444 other upstream 2096929 13454482 ~ 13461103 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other upstream 2387002 13744555 ~ 13751057 (-)

Expression


Co-expression Network