dynll2a (dynll2a,LOC107554284,LOC103397138)


Basic Information

Item Value
gene id dynll2a
gene name dynll2a,LOC107554284,LOC103397138
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9763871 ~ 9796923 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU155453
TGGAGAGCCAGGGATTTTAGCGCGCGCACCAGTCGGCGTTTGACTTGATCCTTATGTTCCTCTCATAGCGTCCAAGGGACATCCGAAACGACGAACGCTCGCACGGCGACCGTTTTCACTTGCAAATTTCTCTCGCTTAATATCGCTGACAGGAACCATGACCGACAGGAAGGCTGTGATCAAGAACGCTGACATGTCCGAAGACATGCAGCAGGATGCAGTGGACTGCGCTACGCAGGCCATGGAGAAATACAACATCGAAAAGGACATTGCCGCGTACATCAAAAAGGAGTTCGATAAGAAATACAATCCGACGtggcattgcattgtgggacgGAACTTCGGCAGCTACGTGACCCACGAGACGAAACACTTCATCTACTTCTACTTGGGCCAGGTGGCCATACTCCTCTTCAAGTCTGGCTGAGTCCGGGCCGGGCCGAACCAGACCGTCGAATGTATCTCCAATGAAGACTGTGATGCACTGGTGGCTGACGTCATCTACGACTATTAAACAAGACCATACCATGACTATGCTGGCGGTGCACAACTGCATGGATCATGTCCCATACTACTTGTGTACATGTTGCGGTTAAATTGCTTTTCATTAGAGGCCCGAGTTTTTGTTAATGGTCCTTGCAGGTTTTTCCTAGCGCACATGTTGTTAAAAACTTAAacggaacaaaaaaaaatgtataataaagtaAGTCAGAAAACGGTGAAGCATTGATCAGCACACATGTCTGCTATAAATGGATATATTTTTGGTGACTTAGTGCTGTAATACATTGAATGCCACGCGCTGTATGTCATTTTTGGGGTATTTGGGGGACGGATAGAAGCACATTTGGTTGTACGGTTTGATTTAAAGCGTTCTGTTGTTATAGAAAGAATGTTTGTGTCTGAATACCTCTGCagtaaatttatattttcttttcatttgcttGAGAGGTACTGCGTTTCGGGAAGACCCATATTGactatttaaaatgtctgtCTGAATATACAACAGACTAGATGTAATTGAAGTgcacatgttaaaaaaaataaataaataaaaagcaaaaacaccaTCTGTAACTCGTATCACGACATACTAACTCCATCAAGCTAGTCATCTACGTAATGTGCGAAACAGGTTTCTGAATGTAAGTAATTAAGGTTTGATCGCACAGCAACCGTCTTTGCCGTCTTCCTGTCTGCTGTTCCAGATGCGTAGAATTAATTtgcatgtgtctttttttttcgcCTTAATTTTACAGTTCTGATCCGTGCACAATCACATGACTGTATAGTTTGCACATAGCACATGCCCACTCAGGTACCGCCTGTGACAAATCGGCCTGTCAGATTCATTAAACTGTGTGA
>TU155454
TGGAGAGCCAGGGATTTTAGCGCGCGCACCAGTCGGCGTTTGACTTGATCCTTATGTTCCTCTCATAGCGTCCAAGGGACATCCGAAACGACGAACGCTCGCACGGCGACCGTTTTCACTTGCAAATTTCTCTCGCTTAATATCGCTGACAGGAACCATGACCGACAGGAAGGCTGTGATCAAGAACGCTGACATGTCCGAAGACATGCAGCAGGATGCAGTGGACTGCGCTACGCAGGCCATGGAGAAATACAACATCGAAAAGGACATTGCCGCGTACATCAAAAAGGAGTTCGATAAGAAATACAATCCGACGtggcattgcattgtgggacgGAACTTCGGCAGCTACGTGACCCACGAGACGAAACACTTCATCTACTTCTACTTGGGCCAGGTGGCCATACTCCTCTTCAAGTCTGGCTGAGTCCGGGCCGGGCCGAACCAGACCGTCGAATGTATCTCCAATGAAGACTGTGATGCACTGGTGGCTGACGTCATCTACGACTATTAAACAAGACCATACCATGACTATGCTGGCGGTGCACAACTGCATGGATCATGTCCCATACTACTTGTGTACATGTTGCGGTTAAATTGCTTTTCATTAGAGGCCCGAGTTTTTGTTAATGGTCCTTGCAGGTTTTTCCTAGCGCACATGTTGTTAAAAACTTAAacggaacaaaaaaaaatgtataataaagtaAGTCAGAAAACGGTGAAGCATTGATCAGCACACATGTCTGCTATAAATGGATATATTTTTGGTGACTTAGTGCTGTAATACATTGAATGCCACGCGCTGTATGTCATTTTTGGGGTATTTGGGGGACGGATAGAAGCACATTTGGTTGTACGGTTTGATTTAAAGCGTTCTGTTGTTATAGAAAGAATGTTTGTGTCTGAATACCTCTGCagtaaatttatattttcttttcatttgcttGAGAGGTACTGCGTTTCGGGAAGACCCATATTGactatttaaaatgtctgtCTGAATATACAACAGACTAGATGTAATTGAAGTgcacatgttaaaaaaaataaataaataaaaagcaaaaacaccaTCTGTAACTCGTATCACGACATACTAACTCCATCAAGCTAGTCATCTACGTAATGTGCGAAACAGGTTTCTGAATGTAAGTAATTAAGGTTTGATCGCACAGCAACCGTCTTTGCCGTCTTCCTGTCTGCTGTTCCAGATGCGTAGAATTAATTtgcatgtgtctttttttttcgcCTTAATTTTACAGTTCTGATCCGTGCACAATCACATGACTGTATAGTTTGCACATAGCACATGCCCACTCAGGTACCGCCTGTGACAAATCGGCCTGTCAGATTCATTAAACTGTGTGACTGAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatactctctcactgtctctgtctctcttcttatcccccttgtttattccttcccttctggcatgtactaatttgaacactccctgtgactgggtgttataagcacttacactgtctgtttgtctctctaaaaaaatgaatcgctgttgtactctcaattgtaagtcg
>XM_043258963.1
AGCCAATGGCGAGCGCTGTGTAGGACGGCATTGTGGAGAGCCAGGGATTTTAGCGCGCGCACCAGTCGGCGTTTGACTTGATCCTTATGTTCCTCTCATAGCGTCCAAGGGACATCCGAAACGACGAACGCTCGCACGGCGACCGTTTTCACTTGCAAATTTCTCTCGCTTAATATCGCTGACAGGAACCATGACCGACAGGAAGGCTGTGATCAAGAACGCTGACATGTCCGAAGACATGCAGCAGGATGCAGTGGACTGCGCTACGCAGGCCATGGAGAAATACAACATCGAAAAGGACATTGCCGCGTACATCAAAAAGGAGTTCGATAAGAAATACAATCCGACGtggcattgcattgtgggacgGAACTTCGGCAGCTACGTGACCCACGAGACGAAACACTTCATCTACTTCTACTTGGGCCAGGTGGCCATACTCCTCTTCAAGTCTGGCTGAGTCCGGGCCGGGCCGAACCAGACCGTCGAATGTATCTCCAATGAAGACTGTGATGCACTGGTGGCTGACGTCATCTACGACTATTAAACAAGACCATACCATGACTATGCTGGCGGTGCACAACTGCATGGATCATGTCCCATACTACTTGTGTACATGTTGCGGTTAAATTGCTTTTCATTAGAGGCCCGAGTTTTTGTTAATGGTCCTTGCAGGTTTTTCCTAGCGCACATGTTGTTAAAAACTTAAacggaacaaaaaaaaatgtataataaagtaAGTCAGAAAACGGTGAAGCATTGATCAGCACACATGTCTGCTATAAATGGATATATTTTTGGTGACTTAGTGCTGTAATACATTGAATGCCACGCGCTGTATGTCATTTTTGGGGTATTTGGGGGACGGATAGAAGCACATTTGGTTGTACGGTTTGATTTAAAGCGTTCTGTTGTTATAGAAAGAATGTTTGTGTCTGAATACCTCTGCagtaaatttatattttcttttcatttgcttGAGAGGTACTGCGTTTCGGGAAGACCCATATTGactatttaaaatgtctgtCTGAATATACAACAGACTAGATGTAATTGAAGTgcacatgttaaaaaaaataaataaataaaaagcaaaaacaccaTCTGTAACTCGTATCACGACATACTAACTCCATCAAGCTAGTCATCTACGTAATGTGCGAAACAGGTTTCTGAATGTAAGTAATTAAGGTTTGATCGCACAGCAACCGTCTTTGCCGTCTTCCTGTCTGCTGTTCCAGATGCGTAGAATTAATTtgcatgtgtctttttttttcgcCTTAATTTTACAGTTCTGATCCGTGCACAATCACATGACTGTATAGTTTGCACATAGCACATGCCCACTCAGGTACCGCCTGTGACAAATCGGCCTGTCAGATTCATTAAACTGTGTGACTGAAa

Function

symbol description
dynll2a Predicted to enable cytoskeletal motor activity. Predicted to act upstream of or within microtubule-based process. Located in P granule and nucleus. Is expressed in central nervous system; hindbrain; lateral line ganglion; polster; and rhombomere. Orthologous to human DYNLL2 (dynein light chain LC8-type 2).

NR:

description
PREDICTED: dynein light chain 2, cytoplasmic-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155453 False 1368 TUCP 0.43 3 9793748 9796890
TU155454 True 1584 TUCP 0.42 4 9763871 9796890
XM_043258963.1 False 1407 mRNA 0.44 3 9793742 9796923

Neighbor

gene id symbol gene type direction distance location
synrg synrg,LOC107713459,LOC107554286,LOC107582605,LOC107727910 coding downstream 3701 9716699 ~ 9760170 (-)
rab34a rab34a,LOC107758713,LOC107672399,LOC107657101 coding downstream 191137 9568660 ~ 9572734 (-)
proca1 proca1,LOC107758694,LOC107582608,LOC107672398,LOC107694032,LOC107752378,LOC107592754 coding downstream 198109 9560292 ~ 9565762 (-)
ywhag2 ywhag2,LOC103021402,LOC107582613,LOC101160255,LOC107694031,LOC100700540 coding downstream 228755 9530883 ~ 9535116 (-)
rrp8 rrp8,LOC107752393 coding downstream 266237 9494048 ~ 9497634 (-)
srsf1a srsf1b,srsf1a,LOC107704814,LOC107587230,LOC103029385,LOC108278759,LOC108415197,LOC107661749 coding upstream 1095 9798018 ~ 9801553 (-)
aldoca aldoca,LOC107727913,LOC107661107,LOC107714247,LOC107582599 coding upstream 4968 9801891 ~ 9805862 (-)
rskra sgk494a,LOC107672358,LOC107714397 coding upstream 10738 9807661 ~ 9816653 (-)
LOC122358935 LOC107672385,LOC107661106,LOC107727920 coding upstream 20199 9817122 ~ 9839615 (-)
glod4 glod4,LOC107582600,LOC107716459,LOC107727906,LOC107672377,LOC107661120 coding upstream 43594 9840517 ~ 9843470 (-)
G105279 NA non-coding downstream 13382 9749836 ~ 9750489 (-)
G105278 NA non-coding downstream 25228 9719933 ~ 9738643 (-)
G105277 NA non-coding downstream 47561 9716009 ~ 9716310 (-)
G105273 NA non-coding downstream 57907 9705675 ~ 9705964 (-)
G105272 NA non-coding downstream 58867 9704736 ~ 9705004 (-)
G105321 NA non-coding upstream 289909 10086832 ~ 10093990 (-)
G105329 NA non-coding upstream 315862 10112785 ~ 10113020 (-)
G105339 NA non-coding upstream 376555 10173478 ~ 10175599 (-)
G105361 NA non-coding upstream 447025 10243948 ~ 10249609 (-)
G105362 NA non-coding upstream 448541 10245464 ~ 10251995 (-)
G105059 NA other downstream 208084 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 327074 9434426 ~ 9436797 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 717756 9038896 ~ 9046115 (-)
LOC122359140 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 other downstream 1101007 8657688 ~ 8662864 (-)
zgc:114130 zgc:114130,LOC107758457,LOC107749642,LOC107678256,LOC107560624,LOC107684198,LOC107561367 other downstream 1250412 8510382 ~ 8513459 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other upstream 715708 10512631 ~ 10514062 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other upstream 862011 10658934 ~ 10663588 (-)
igsf9ba LOC107748591,LOC107713446,LOC107699903,LOC107582621,LOC107662765,LOC107597523 other upstream 1276358 11073281 ~ 11506177 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 1505307 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 1529589 11326512 ~ 11342116 (-)

Expression


Co-expression Network