rskra (sgk494a,LOC107672358,LOC107714397)


Basic Information

Item Value
gene id rskra
gene name sgk494a,LOC107672358,LOC107714397
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9807661 ~ 9816653 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258276.1
CTCGCGCTCCTGCGCGCGTATGAAAGGTTTGCGCGTGCCTGCTGAAACAGCGGTGTCTTGTGCGCGAACTAACGTGGGATTCACTTTTCACTGACGGGCGTCCGTGGGAGAgcgcatttgtgttttttttaataattggcGTGGCGTCCATTTCCCGGTGGTCTCGTGCGATGGGCGTGCGATGGGCGGCGAGGGGAGTAAAAACAAGGAATCGGCGTCACCGGTGAAGAGGAGATCCCTGTCATGTCACCAGGGCTTCCTTTCTCTCCCGCCTCAGCTTCTTCATCACGGTGTATTTAGACGCCACGGCCAGCACAGAGAATACCCCGTCTCTGAGCAATCTCGGCCCTCAGACTCCAACCCCGAGGGGCCTCGTCTAGAGTGGACGCTGCCAggctttatttctattttcctGCCGGAATTTCCTCACGGGTTCACTGCACAGAAGCATTTAAAGATTCTTGGTTTTGTAGCGAAGGGCTCGTTTGGTCCAATCCTGAAGGTGAAAGACGTGTCTAAAGACGAGACCTACGCTATCAAGGTTTTACCCAAAGCTGAGGTTTTGAGACACGGAGTCCTCCAGCAGTCCAAAGAGGAGGTGATAATTCAACGACAAGTCAGACATCCTTTCGTCCTCAGTCTCCGGGACTGTTGGCAGAGCCAGAGCAATCTCTTCATCAtgtgtgatTACTGCAGTACTGGAGATCTGTATACTTACTGGACCCTGAAGGGCCGCTTTGATGAGAGAGATGTTCGAGTGTTTGCTGCCGAGTTGGGCTCTGCTTTGGgcTTTTTGCATGATTTTGGAGTAATACATAGAGATGTGAAGATGGAGAACATACTTCTGACTGATAAAGGTCACGTCCGCTTGACTGATTTCGGTCTGTCTCGCCGTCTTGAGCGTGGGGATAGAGCTTTTACTATCTGCGGCACGATACAGTACATGGCTCCCGAGGTCCTGAGCGGCGGTCCGTACAGCCACGCTGCAGACTGGTGGTCTCTTGGTATTCTTCTCTATGCTCTAGCCACTGGAGGGTTTCCCCTGCCTGCGGAAGCAGATCATTGTGATATGTTGAGCAGCGTCAGTGAGTGTCCGTATGACATGCCTGCGAGCCTCGGCCCATCTCTGGCCTTCCTGCTCATAGAGCTTCTGTGTAAGATCCCCACACGTCGCTTACGCTGCCTGGAGCTCTTCCAAAGCCAGGCGGTTTTCCACGGCATGTCTTTTGACTCCCAGCTGCTGCAGAAACGTCCCATTGAGCCAATCCTGGAGCTGAAGAATCATCCTGACCGACCGGAAAGGTCGATGCGAGGCTTATCATTAGACCTGCTTCAGAATTTTGAGTGTGACCTACTGAACTCTCCATCCACCCCGGCAGATGCGTCTCCTACCTTGATGAAGATTGAGGTAAATGAAGACGCGGCAGGGGCTAAAACAAAAGCTACAGGAGCCAATTCTACATGAAAacgtaaatgtaaaattcagtGATTTGCCAAAGACGAGATAAAATGATATGTAAATAGCCAGTCAATAACAAGTATTAATATCTAAgtcttatttattaatcatgttTCTAGTCTTTGAATATGCCTACCTAAGCTTACCTCATTTTTGAATGTTAAGTTTTGCCTTAATATAAGGCAATGTTTGTCTTAAAAGTATAGGAactgatgttttttatttagttactgTGTATAATAGAAAGAgtatatcatttaaatgaatctctttttgtaaattaatttttatattcatactgGTTAGAGTGATGCCCCTTTAATGTGGCACCATAAGAGTGATAAtctgtgacaaataaaattccTAACGCTTACATGTAAGTATATTATGATATgcctttttgtaaataatagtTCCAAATGAAGCCAAAGCAGAATCAACTTTTGTGCATTTCCGGAAACGCCCCAGGAATAGTATTTTGCTTCaaaatgaatctgtgtttttgaacaaatttgtTGAGTGAGTGATTCAATGACTCTCTCATAAAGACCTGTCACTTGTTTCGCTAAcgaataaatctgtttttgaatgaaa

Function

NR:

description
PREDICTED: putative serine/threonine-protein kinase F31E3.2 isoform X1

GO:

id name namespace
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K17529 SGK494; uncharacterized serine/threonine-protein kinase SgK494

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258276.1 True 2053 mRNA 0.46 12 9807661 9816653

Neighbor

gene id symbol gene type direction distance location
aldoca aldoca,LOC107727913,LOC107661107,LOC107714247,LOC107582599 coding downstream 1799 9801891 ~ 9805862 (-)
srsf1a srsf1b,srsf1a,LOC107704814,LOC107587230,LOC103029385,LOC108278759,LOC108415197,LOC107661749 coding downstream 6108 9798018 ~ 9801553 (-)
hnf1ba hnf1b,hnf1ba,LOC107582604,LOC107672416,LOC107554285,LOC107661110 coding downstream 29976 9765226 ~ 9777685 (-)
synrg synrg,LOC107713459,LOC107554286,LOC107582605,LOC107727910 coding downstream 47491 9716699 ~ 9760170 (-)
rab34a rab34a,LOC107758713,LOC107672399,LOC107657101 coding downstream 234927 9568660 ~ 9572734 (-)
LOC122358935 LOC107672385,LOC107661106,LOC107727920 coding upstream 469 9817122 ~ 9839615 (-)
glod4 glod4,LOC107582600,LOC107716459,LOC107727906,LOC107672377,LOC107661120 coding upstream 23864 9840517 ~ 9843470 (-)
nxn nxn,typx,LOC107672411,LOC107661105,LOC106612785 coding upstream 31431 9848084 ~ 9906627 (-)
txndc17 txndc17,LOC107661118,LOC107727907 coding upstream 90908 9907561 ~ 9909153 (-)
fam222bb fam222bb,LOC107714568,LOC107727927,LOC107661104,LOC107554279,LOC107582597 coding upstream 102851 9919504 ~ 9926294 (-)
LOC122359357 NA non-coding downstream 16486 9780732 ~ 9791175 (-)
G105279 NA non-coding downstream 57172 9749836 ~ 9750489 (-)
G105278 NA non-coding downstream 69018 9719933 ~ 9738643 (-)
G105277 NA non-coding downstream 91351 9716009 ~ 9716310 (-)
G105273 NA non-coding downstream 101697 9705675 ~ 9705964 (-)
G105321 NA non-coding upstream 270179 10086832 ~ 10093990 (-)
G105329 NA non-coding upstream 296132 10112785 ~ 10113020 (-)
G105339 NA non-coding upstream 356825 10173478 ~ 10175599 (-)
G105361 NA non-coding upstream 427295 10243948 ~ 10249609 (-)
G105362 NA non-coding upstream 428811 10245464 ~ 10251995 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 10738 9763871 ~ 9796923 (-)
G105059 NA other downstream 251874 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 370864 9434426 ~ 9436797 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 761546 9038896 ~ 9046115 (-)
LOC122359140 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 other downstream 1144797 8657688 ~ 8662864 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other upstream 695978 10512631 ~ 10514062 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other upstream 842281 10658934 ~ 10663588 (-)
igsf9ba LOC107748591,LOC107713446,LOC107699903,LOC107582621,LOC107662765,LOC107597523 other upstream 1256628 11073281 ~ 11506177 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 1485577 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 1509859 11326512 ~ 11342116 (-)

Expression


Co-expression Network