si:ch211-213d14.1 (LOC107701402,LOC107659945,LOC107717182,LOC107582659,LOC107713430,LOC107597593)


Basic Information

Item Value
gene id si:ch211-213d14.1
gene name LOC107701402,LOC107659945,LOC107717182,LOC107582659,LOC107713430,LOC107597593
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11187419 ~ 11192049 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258500.1
GTCTATGGTATAGTTCGCTAAAGCGGAGCTGGATTTCGTGTCTTTGGTATAATGGTCAAATTCAGCTGGAGTTTGGGAGCAGACAAAGTTGTTTCACTGGGATAGATAGCCGAGTAGATTTCCTGCTCTCAACATCTGACGTATCTGCATCATGGAAACAGagtgcTCGAAGAGAGTGTACCAGGGAGTCAGGGTGAAGCACACGGTGAAAGATCTGCTGGCAGAAAAGAGGTCACGGCAGACGAGCGGGCCACGTTACGCTGGTGTCTCGTCTCCTCCGAGTCCGTTTGTTCAAATGACTGGTTCTCACATGCTTCCGAGTTACTACGGCATGAGGAGGCCTTTCATTTCGGACACGGAGTTTTGTTCCTCGACTAAACCGTTTTCGGCTGACGTCTACCCCTCGGCGCTAACGGGAAAGTCTCTGTCGTGCGAAAGCGGATGCGTGTCTGGATACTCCTCGCTCATCGACAGCTACTACCCGGAGACTTTTGGAGACTACCGAAGCACTCCTTTCTCCGGCGGAGGGAGCACAATATTCTCGCCCTCTGCGTTGTCTTCTTTGCTCCCTTCTTACTCCGGTGACCCTTCACATTATTTGCTGGTAAGATGTGGCACACGAGGTGGCacggaaaaaacaaacaaacacgtcAGCGCTGTTGAAGTGTAG

Function

NR:

description
PREDICTED: uncharacterized protein C11orf53 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258500.1 True 670 mRNA 0.51 4 11187419 11192049

Neighbor

gene id symbol gene type direction distance location
LOC122358618 LOC107713430,LOC107701402,LOC107659945,LOC107582659,LOC107717182,LOC107597593 coding downstream 136 11185150 ~ 11187283 (-)
LOC122359110 LOC107717180,LOC107713465,LOC107597510,LOC107582585 coding downstream 2319 11179336 ~ 11185100 (-)
arhgap32a arhgap32a,LOC107713447,LOC107662764,LOC107582574,LOC107699902,LOC107597520 coding downstream 114909 11045951 ~ 11072510 (-)
ncam1b LOC107748595 coding downstream 332235 10773572 ~ 10855184 (-)
zbtb16b zbtb16b,LOC107713452,LOC107582577,LOC107701406,LOC107597519,LOC107699906,LOC108435307,LOC107748597 coding downstream 415281 10721967 ~ 10772138 (-)
LOC122358470 NA coding upstream 340392 11532441 ~ 11533631 (-)
LOC122358629 NA coding upstream 348024 11540073 ~ 11541164 (-)
LOC122359552 NA coding upstream 353173 11545222 ~ 11546883 (-)
LOC122358630 NA coding upstream 360852 11552901 ~ 11554310 (-)
thyn1 thyn1,LOC107713442,LOC107699901,LOC107748590,LOC107597527,LOC107582572 coding upstream 381448 11573497 ~ 11575403 (-)
G105674 pou2af1,LOC107582583,LOC107713464,LOC107717181 non-coding downstream 15680 11169121 ~ 11171739 (-)
G105653 NA non-coding downstream 158641 10969169 ~ 11028778 (-)
G105497 NA non-coding downstream 675156 10475572 ~ 10512263 (-)
G105462 NA non-coding downstream 717982 10466964 ~ 10469437 (-)
G105461 NA non-coding downstream 725350 10461741 ~ 10462069 (-)
G105694 NA non-coding upstream 112934 11304983 ~ 11306514 (-)
LOC122359088 NA non-coding upstream 133226 11325275 ~ 11325997 (-)
LOC122358449 NA non-coding upstream 229805 11421854 ~ 11425407 (-)
LOC122358535 NA non-coding upstream 320597 11512646 ~ 11513531 (-)
LOC122358725 NA non-coding upstream 333817 11525866 ~ 11526684 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other downstream 523831 10658934 ~ 10663588 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other downstream 673357 10512631 ~ 10514062 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 1390496 9763871 ~ 9796923 (-)
G105059 NA other downstream 1631632 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 1750622 9434426 ~ 9436797 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 110181 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 134463 11326512 ~ 11342116 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other upstream 161597 11353646 ~ 11357553 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other upstream 650717 11842766 ~ 11855895 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other upstream 838599 12030648 ~ 12033594 (-)

Expression


Co-expression Network