LOC122359110 (LOC107717180,LOC107713465,LOC107597510,LOC107582585)


Basic Information

Item Value
gene id LOC122359110
gene name LOC107717180,LOC107713465,LOC107597510,LOC107582585
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11179336 ~ 11185100 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259278.1
ATGCGAAAACTAACCCGTTCGCTGCCGGATCGCCGGCGCGCGCAGACCAATGGAGTCTTGGCTGGGAACGCGGGCATGGTTTCGCAATCTAgcgttatattatatttattagcGTTTTCCAGTGGCATATAAAAACGAATTCTGTGCACGGTCAGACGTGTAGAGGGGCAATGGCATATAAAGTGTTCTGAATATCGTATCATTTACGAGGCTCGTTCCGTTTATTTTCATtcgttttatttgattaaaaaacaaatattttcgtTTAATGGCAAGTGGTGTGatcattaagtaaaaaaacttCATTATTGACAACCAGATAGTTTATTcagaacagtttttaaatacattttacacaacTGCATCGCTGCCAGCATATCATCAGCTCCCCccagtatacatttttttttttttactgatgtgAACGTATTTGACCCGAATCCCCACAAAACGGTTTAGATAACGCATGCACGATCATCACAGAGGTTTATTCGAGTCTCGTGCGTTTCACCAGCATAAGTCACATCACTGACCCACAAGCACTGTCTTTAAATGAATACGacttttaaagacttttaaagaCTCGATTCCAATGcgtttgcattttcttttggcaaaatgaaaataaaaatctacataGAATGCTTTCCTGGAgatttgcaataaaatattgaaaatcaGTTCCACTGCATGAactcaaatcctttttttttctctctctctctctctctctctctccgtccaGCAGACAAACCTAAGGTATACCAGGGCGTGCGTGTGAAGACCACCGTTAAGGAGTTACTGCAGAAGCACAGAGCCCTGCAGGCACAGAAAACCGCAACGAAGTCGCAAGCCGTTGCTGCCCGCGATGCCTGCTCCACGACCACGAACACCCACCTAGATGTCTTTGGAATGCAAGCTCCAGAGCCCTATTTCCAGACACGTGCCTTTACCGAAAATGTCAACATCCCGATGGAGAATGCTTACGATCATCAGCAGATGATGCACATGATGCCACCCGAGACTTTCAGCGGCGGCAATTTCGTGTGTGCCACCTCCGCGCAGTGGTCTAACGGATATCTACCTTCTAACGCGGACCTCTATGGCAGCAGCCTGGTTTCGAGATCGCCCTCGGACTCCTTCAATCTCCCCAGCCCCGTCGACTACAACAGCTACTCTCCCCCTCAGTCCAACTCCTCGTCTTCTTCGTGCTACAGCTCCCCAACGCGGATGGATTTGAGCTCCAGTTTCTCTCCAGAAAGCTACCACTATCAGCATTGCAGCCTGCAGCACTGCTTTTGTCTGTCGCACTGGTCCAGCGCGCAGGAAGGCATGGCAACCTCGGAGTTTGCGCCCTACGGCTCATCAGACTGTTTGTACTCGTATGGCGACGACAGCTATTTCAGGAGGGATACTTCGAGTTCAGAGATGTGTTacttgtaaaatgcattttgaagcaCTTTGCGCGAACATCCAGTGTCATAACTGATCCATTCGtatgattttgttgttgttgtattttggttttagatAAAAGAACAAGCAGAGGTAGATGCACGATCGGGCTTAGTTTAGAAGAGTagtttaagcaaaaaaaaagttgattgcAGAGagttaaatactgtatgtgtgagtgtaatttacaaattattcatttatcttttttacaataaacatatttttcgtA
>XM_043259279.1
GACTCATTCtgtgctttaatttaaaacgGATTTCTATGGATTGCAATGGTTTTACAGTCATAGTCACTAGCAACGTCTTTTCCTAGTCTGTTTTTTTACTCAAGCACGTGAAGAGTTTGCGTACATGTGTACGCtcatcttaaaataaactgcTTATAATTGAAATTCCTATATGAGCGGAGCAGCGTATAGTACGATGAATGACCTTCTCCGGTTTAGTCACCAGGGGGCGCCATTCAACCAGTCTACCTCAACCTCCCCCTCGACCCGGCTTCAAGGCTTTCTGAAGAGATTTCACTTAGATTTATCAAGTATATATTCAGAAACGTGGCTGATAAAGAGGGCCGGTAAGAAAATATCGCTTAAATAAGTCGAGGTCTGTTTTTAGCGGCGGACTGACACGACAAAACGATTTCACAGAGGAGCGAAACGCCGAAGGAGCAACTGGGCACAGTGTGAATAAAACCCAACCGAGGCGTTTGAAGACGCGTTTATTAAGAACTCGCTTAAACGTCCAATTATTCAGCAGTTCTGCGTCGATACTGTCCCGTTTTTCCCCAACCCGTGCTGCACGCCAACGCGGAGCCGTTTTTTCGGGCTCCTCTCCTGAGACAAAGAGCACCTGCGTTCACTCCGGCGTTCGCTCTTAAACGCGTTCCCGCTTAAATCCGATAAATTAACAGCAGCGTTGCGATTTCAAAGGTGTAAAGAAATGTAAACGCGCCGCTCTTAGCCAGTCCGTTTCAGCAGAAGTCAGTCAGGTGTGCGAGGCTGGGTTTGAGATCAGCACCACCCGGCATCAAACAGCACCCCGTTCACGCGTTTTTAAGGCTGAGGCGAAGATGATTCGTCGATTAATTAAAGCGttgcattaaaatcaaaaaacacGAGGAGAGAAGAAATGCATAGATACTATTACGAACGCCGTTCGTTGTTTGAATCTCATTCGAGCCGGCTTTTGGTTTCCAGCGATTGCCTGCTCGACCtctcaattaattatttttttttaattctaactattaattaatattcacgCGCCTCGCATCTCTCTCCACTGCAACAACTTCACTTCAGCAGACGTCCCAATTGTTCTAACGACAAACATGGCTGCTATCATATGCCACGCCCACCAATTCAATAATtcttaaaatactgcaaaaaatgGGACCCACGGGACgctatattaattttttttgataagGCTACCCATTGCTGAAGACCTCCACAGTGTGCCACGGCTCGCAAAAGCCCTTTTGTGCCTTGTGTCTCACTGCAAAGTAGAAATAGTGCTTCTGAGGGAGACTCCAATCATCAACACCAAAAGGGTgataaaatgttagaaatatatatttggttGATGTCAAAATGCGAAATAACACGACATTCCATTAAAAGAGATGCTGTTATATGCACTGTAATAGCGAATTTCACTCAGAAATAAGTCTTTTTACGAAGCTTTTGAATATTCAAATTGAAAGTATCGCGCAATCAAATCATTGTCAAATCATTGAGTTCTTGGGGTTTTAAATAGTAGGGATGAGGGGAGAAAAACTCAAACTAAAATATCCCTAGCTATATTACTGTATAATTGTATGTCCTGAGAGTGTTTTGAGGTGACTTTGTCGAGACTTTTTGAGACTTTTGTGAATAATTCGTTCTTGCCCATATAATAGAGCAAAGAACTGACGTTGGGGTATTTCACTGTAGTTCTTCCAGAGGTTTCCTCCTTTTCAGGCCAATATGTCTGCAGACAAACCTAAGGTATACCAGGGCGTGCGTGTGAAGACCACCGTTAAGGAGTTACTGCAGAAGCACAGAGCCCTGCAGGCACAGAAAACCGCAACGAAGTCGCAAGCCGTTGCTGCCCGCGATGCCTGCTCCACGACCACGAACACCCACCTAGATGTCTTTGGAATGCAAGCTCCAGAGCCCTATTTCCAGACACGTGCCTTTACCGAAAATGTCAACATCCCGATGGAGAATGCTTACGATCATCAGCAGATGATGCACATGATGCCACCCGAGACTTTCAGCGGCGGCAATTTCGTGTGTGCCACCTCCGCGCAGTGGTCTAACGGATATCTACCTTCTAACGCGGACCTCTATGGCAGCAGCCTGGTTTCGAGATCGCCCTCGGACTCCTTCAATCTCCCCAGCCCCGTCGACTACAACAGCTACTCTCCCCCTCAGTCCAACTCCTCGTCTTCTTCGTGCTACAGCTCCCCAACGCGGATGGATTTGAGCTCCAGTTTCTCTCCAGAAAGCTACCACTATCAGCATTGCAGCCTGCAGCACTGCTTTTGTCTGTCGCACTGGTCCAGCGCGCAGGAAGGCATGGCAACCTCGGAGTTTGCGCCCTACGGCTCATCAGACTGTTTGTACTCGTATGGCGACGACAGCTATTTCAGGAGGGATACTTCGAGTTCAGAGATGTGTTacttgtaaaatgcattttgaagcaCTTTGCGCGAACATCCAGTGTCATAACTGATCCATTCGtatgattttgttgttgttgtattttggttttagatAAAAGAACAAGCAGAGGTAGATGCACGATCGGGCTTAGTTTAGAAGAGTagtttaagcaaaaaaaaagttgattgcAGAGagttaaatactgtatgtgtgagtgtaatttacaaattattcatttatcttttttacaataaacatatttttcgtA
>XM_043259281.1
GACTCATTCtgtgctttaatttaaaacgGATTTCTATGGATTGCAATGGTTTTACAGTCATAGTCACTAGCAACGTCTTTTCCTAGTCTGTTTTTTTACTCAAGCACGTGAAGAGTTTGCGTACATGTGTACGCtcatcttaaaataaactgcTTATAATTGAAATTCCTATATGAGCGGAGCAGCGTATAGTACGATGAATGACCTTCTCCGGTTTAGTCACCAGGGGGCGCCATTCAACCAGTCTACCTCAACCTCCCCCTCGACCCGGCTTCAAGGCTTTCTGAAGAGATTTCACTTAGATTTATCAAGTATATATTCAGAAACGTGGCTGATAAAGAGGGCCGGTAAGAAAATATCGCTTAAATAAGTCGAGGTCTGTTTTTAGCGGCGGACTGACACGACAAAACGATTTCACAGAGGAGCGAAACGCCGAAGGAGCAACTGGGCACAGTGTGAATAAAACCCAACCGAGGCGTTTGAAGACGCGTTTATTAAGAACTCGCTTAAACGTCCAATTATTCAGCAGTTCTGCGTCGATACTGTCCCGTTTTTCCCCAACCCGTGCTGCACGCCAACGCGGAGCCGTTTTTTCGGGCTCCTCTCCTGAGACAAAGAGCACCTGCGTTCACTCCGGCGTTCGCTCTTAAACGCGTTCCCGCTTAAATCCGATAAATTAACAGCAGCGTTGCGATTTCAAAGGTGTAAAGAAATGTAAACGCGCCGCTCTTAGCCAGTCCGTTTCAGCAGAAGTCAGTCAGGTGTGCGAGGCTGGGTTTGAGATCAGCACCACCCGGCATCAAACAGCACCCCGTTCACGCGTTTTTAAGGCTGAGGCGAAGATGATTCGTCGATTAATTAAAGCGttgcattaaaatcaaaaaacacGAGGAGAGAAGAAATGCATAGATACTATTACGAACGCCGTTCGTTGTTTGAATCTCATTCGAGCCGGCTTTTGGTTTCCAGCGATTGCCTGCTCGACCtctcaattaattatttttttttaattctaactattaattaatattcacgCGCCTCGCATCTCTCTCCACTGCAACAACTTCACTTCAGCAGACGTCCCAATTGTTCTAACGACAAACATGGCTGCTATCATATGCCACGCCCACCAATTCAATAATtcttaaaatactgcaaaaaatgGGACCCACGGGACgctatattaattttttttgataagGCTACCCATTGCTGAAGACCTCCACAGTGTGCCACGGCTCGCAAAAGCCCTTTTGTGCCTTGTGTCTCACTGCAAAGTAGAAATAGTGCTTCTGAGGGAGACTCCAATCATCAACACCAAAAGGGTgataaaatgttagaaatatatatttggttGATGTCAAAATGCGAAATAACACGACATTCCATTAAAAGAGATGCTGTTATATGCACTGTAATAGCGAATTTCACTCAGAAATAAGTCTTTTTACGAAGCTTTTGAATATTCAAATTGAAAGTATCGCGCAATCAAATCATTGTCAAATCATTGAGTTCTTGGGGTTTTAAATAGTAGGGATGAGGGGAGAAAAACTCAAACTAAAATATCCCTAGCTATATTACTGTATAATTGTATGTCCTGAGAGTGTTTTGAGGTGACTTTGTCGAGACTTTTTGAGACTTTTGTGAATAATTCGTTCTTGCCCATATAATAGAGCAAAGAACTGACGTTGGGGTATTTCACTGTAGTTCTTCCAGAGGTTTCCTCCTTTTCAGGCCAATATGTCTGACAAACCTAAGGTATACCAGGGCGTGCGTGTGAAGACCACCGTTAAGGAGTTACTGCAGAAGCACAGAGCCCTGCAGGCACAGAAAACCGCAACGAAGTCGCAAGCCGTTGCTGCCCGCGATGCCTGCTCCACGACCACGAACACCCACCTAGATGTCTTTGGAATGCAAGCTCCAGAGCCCTATTTCCAGACACGTGCCTTTACCGAAAATGTCAACATCCCGATGGAGAATGCTTACGATCATCAGCAGATGATGCACATGATGCCACCCGAGACTTTCAGCGGCGGCAATTTCGTGTGTGCCACCTCCGCGCAGTGGTCTAACGGATATCTACCTTCTAACGCGGACCTCTATGGCAGCAGCCTGGTTTCGAGATCGCCCTCGGACTCCTTCAATCTCCCCAGCCCCGTCGACTACAACAGCTACTCTCCCCCTCAGTCCAACTCCTCGTCTTCTTCGTGCTACAGCTCCCCAACGCGGATGGATTTGAGCTCCAGTTTCTCTCCAGAAAGCTACCACTATCAGCATTGCAGCCTGCAGCACTGCTTTTGTCTGTCGCACTGGTCCAGCGCGCAGGAAGGCATGGCAACCTCGGAGTTTGCGCCCTACGGCTCATCAGACTGTTTGTACTCGTATGGCGACGACAGCTATTTCAGGAGGGATACTTCGAGTTCAGAGATGTGTTacttgtaaaatgcattttgaagcaCTTTGCGCGAACATCCAGTGTCATAACTGATCCATTCGtatgattttgttgttgttgtattttggttttagatAAAAGAACAAGCAGAGGTAGATGCACGATCGGGCTTAGTTTAGAAGAGTagtttaagcaaaaaaaaagttgattgcAGAGagttaaatactgtatgtgtgagtgtaatttacaaattattcatttatcttttttacaataaacatatttttcgtA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107717180 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259278.1 False 1687 mRNA 0.44 4 11179336 11181944
XM_043259279.1 True 2689 mRNA 0.44 5 11179336 11185100
XM_043259281.1 False 2686 mRNA 0.44 5 11179336 11185100

Neighbor

gene id symbol gene type direction distance location
arhgap32a arhgap32a,LOC107713447,LOC107662764,LOC107582574,LOC107699902,LOC107597520 coding downstream 106826 11045951 ~ 11072510 (-)
ncam1b LOC107748595 coding downstream 324152 10773572 ~ 10855184 (-)
zbtb16b zbtb16b,LOC107713452,LOC107582577,LOC107701406,LOC107597519,LOC107699906,LOC108435307,LOC107748597 coding downstream 407198 10721967 ~ 10772138 (-)
LOC122358615 LOC107713453,LOC107701410,LOC107713428,LOC107582658,LOC107701407,LOC107597597,LOC107708768,LOC107582657 coding downstream 455838 10712618 ~ 10723498 (-)
LOC122359108 LOC107713428,LOC107582658,LOC107701407,LOC107597597,LOC107713453,LOC107701410,LOC107708768 coding downstream 471280 10707076 ~ 10708056 (-)
LOC122358618 LOC107713430,LOC107701402,LOC107659945,LOC107582659,LOC107717182,LOC107597593 coding upstream 50 11185150 ~ 11187283 (-)
si:ch211-213d14.1 LOC107701402,LOC107659945,LOC107717182,LOC107582659,LOC107713430,LOC107597593 coding upstream 2319 11187419 ~ 11192049 (-)
LOC122358470 NA coding upstream 347341 11532441 ~ 11533631 (-)
LOC122358629 NA coding upstream 354973 11540073 ~ 11541164 (-)
LOC122359552 NA coding upstream 360122 11545222 ~ 11546883 (-)
G105674 pou2af1,LOC107582583,LOC107713464,LOC107717181 non-coding downstream 7597 11169121 ~ 11171739 (-)
G105653 NA non-coding downstream 150558 10969169 ~ 11028778 (-)
G105497 NA non-coding downstream 667073 10475572 ~ 10512263 (-)
G105462 NA non-coding downstream 709899 10466964 ~ 10469437 (-)
G105461 NA non-coding downstream 717267 10461741 ~ 10462069 (-)
G105694 NA non-coding upstream 119883 11304983 ~ 11306514 (-)
LOC122359088 NA non-coding upstream 140175 11325275 ~ 11325997 (-)
LOC122358449 NA non-coding upstream 236754 11421854 ~ 11425407 (-)
LOC122358535 NA non-coding upstream 327546 11512646 ~ 11513531 (-)
LOC122358725 NA non-coding upstream 340766 11525866 ~ 11526684 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other downstream 515748 10658934 ~ 10663588 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other downstream 665274 10512631 ~ 10514062 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 1382413 9763871 ~ 9796923 (-)
G105059 NA other downstream 1623549 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 1742539 9434426 ~ 9436797 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 117130 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 141412 11326512 ~ 11342116 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other upstream 168546 11353646 ~ 11357553 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other upstream 657666 11842766 ~ 11855895 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other upstream 845548 12030648 ~ 12033594 (-)

Expression


Co-expression Network