RNA id: XM_043259279.1


Basic Information

Item Value
RNA id XM_043259279.1
length 2689
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC122359110
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11179336 ~ 11185100 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACTCATTCtgtgctttaatttaaaacgGATTTCTATGGATTGCAATGGTTTTACAGTCATAGTCACTAGCAACGTCTTTTCCTAGTCTGTTTTTTTACTCAAGCACGTGAAGAGTTTGCGTACATGTGTACGCtcatcttaaaataaactgcTTATAATTGAAATTCCTATATGAGCGGAGCAGCGTATAGTACGATGAATGACCTTCTCCGGTTTAGTCACCAGGGGGCGCCATTCAACCAGTCTACCTCAACCTCCCCCTCGACCCGGCTTCAAGGCTTTCTGAAGAGATTTCACTTAGATTTATCAAGTATATATTCAGAAACGTGGCTGATAAAGAGGGCCGGTAAGAAAATATCGCTTAAATAAGTCGAGGTCTGTTTTTAGCGGCGGACTGACACGACAAAACGATTTCACAGAGGAGCGAAACGCCGAAGGAGCAACTGGGCACAGTGTGAATAAAACCCAACCGAGGCGTTTGAAGACGCGTTTATTAAGAACTCGCTTAAACGTCCAATTATTCAGCAGTTCTGCGTCGATACTGTCCCGTTTTTCCCCAACCCGTGCTGCACGCCAACGCGGAGCCGTTTTTTCGGGCTCCTCTCCTGAGACAAAGAGCACCTGCGTTCACTCCGGCGTTCGCTCTTAAACGCGTTCCCGCTTAAATCCGATAAATTAACAGCAGCGTTGCGATTTCAAAGGTGTAAAGAAATGTAAACGCGCCGCTCTTAGCCAGTCCGTTTCAGCAGAAGTCAGTCAGGTGTGCGAGGCTGGGTTTGAGATCAGCACCACCCGGCATCAAACAGCACCCCGTTCACGCGTTTTTAAGGCTGAGGCGAAGATGATTCGTCGATTAATTAAAGCGttgcattaaaatcaaaaaacacGAGGAGAGAAGAAATGCATAGATACTATTACGAACGCCGTTCGTTGTTTGAATCTCATTCGAGCCGGCTTTTGGTTTCCAGCGATTGCCTGCTCGACCtctcaattaattatttttttttaattctaactattaattaatattcacgCGCCTCGCATCTCTCTCCACTGCAACAACTTCACTTCAGCAGACGTCCCAATTGTTCTAACGACAAACATGGCTGCTATCATATGCCACGCCCACCAATTCAATAATtcttaaaatactgcaaaaaatgGGACCCACGGGACgctatattaattttttttgataagGCTACCCATTGCTGAAGACCTCCACAGTGTGCCACGGCTCGCAAAAGCCCTTTTGTGCCTTGTGTCTCACTGCAAAGTAGAAATAGTGCTTCTGAGGGAGACTCCAATCATCAACACCAAAAGGGTgataaaatgttagaaatatatatttggttGATGTCAAAATGCGAAATAACACGACATTCCATTAAAAGAGATGCTGTTATATGCACTGTAATAGCGAATTTCACTCAGAAATAAGTCTTTTTACGAAGCTTTTGAATATTCAAATTGAAAGTATCGCGCAATCAAATCATTGTCAAATCATTGAGTTCTTGGGGTTTTAAATAGTAGGGATGAGGGGAGAAAAACTCAAACTAAAATATCCCTAGCTATATTACTGTATAATTGTATGTCCTGAGAGTGTTTTGAGGTGACTTTGTCGAGACTTTTTGAGACTTTTGTGAATAATTCGTTCTTGCCCATATAATAGAGCAAAGAACTGACGTTGGGGTATTTCACTGTAGTTCTTCCAGAGGTTTCCTCCTTTTCAGGCCAATATGTCTGCAGACAAACCTAAGGTATACCAGGGCGTGCGTGTGAAGACCACCGTTAAGGAGTTACTGCAGAAGCACAGAGCCCTGCAGGCACAGAAAACCGCAACGAAGTCGCAAGCCGTTGCTGCCCGCGATGCCTGCTCCACGACCACGAACACCCACCTAGATGTCTTTGGAATGCAAGCTCCAGAGCCCTATTTCCAGACACGTGCCTTTACCGAAAATGTCAACATCCCGATGGAGAATGCTTACGATCATCAGCAGATGATGCACATGATGCCACCCGAGACTTTCAGCGGCGGCAATTTCGTGTGTGCCACCTCCGCGCAGTGGTCTAACGGATATCTACCTTCTAACGCGGACCTCTATGGCAGCAGCCTGGTTTCGAGATCGCCCTCGGACTCCTTCAATCTCCCCAGCCCCGTCGACTACAACAGCTACTCTCCCCCTCAGTCCAACTCCTCGTCTTCTTCGTGCTACAGCTCCCCAACGCGGATGGATTTGAGCTCCAGTTTCTCTCCAGAAAGCTACCACTATCAGCATTGCAGCCTGCAGCACTGCTTTTGTCTGTCGCACTGGTCCAGCGCGCAGGAAGGCATGGCAACCTCGGAGTTTGCGCCCTACGGCTCATCAGACTGTTTGTACTCGTATGGCGACGACAGCTATTTCAGGAGGGATACTTCGAGTTCAGAGATGTGTTacttgtaaaatgcattttgaagcaCTTTGCGCGAACATCCAGTGTCATAACTGATCCATTCGtatgattttgttgttgttgtattttggttttagatAAAAGAACAAGCAGAGGTAGATGCACGATCGGGCTTAGTTTAGAAGAGTagtttaagcaaaaaaaaagttgattgcAGAGagttaaatactgtatgtgtgagtgtaatttacaaattattcatttatcttttttacaataaacatatttttcgtA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156092 lncRNA downstream 7597 11169121 ~ 11171739 (-) True G105674
TU156066 lncRNA downstream 62046 11073281 ~ 11117290 (-) False igsf9ba
TU156047 lncRNA downstream 150558 10969169 ~ 11028778 (-) True G105653
TU155793 lncRNA downstream 667073 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 667109 10475572 ~ 10512227 (-) False G105497
TU156122 lncRNA upstream 119883 11304983 ~ 11306514 (-) True G105694
XR_006252684.1 lncRNA upstream 140175 11325275 ~ 11325997 (-) True LOC122359088
XR_006252603.1 lncRNA upstream 236754 11421854 ~ 11425407 (-) True LOC122358449
TU156059 lncRNA upstream 275280 11460380 ~ 11464483 (-) False igsf9ba
XR_006252620.1 lncRNA upstream 327546 11512646 ~ 11513531 (-) True LOC122358535
XM_043258498.1 mRNA downstream 68102 11073281 ~ 11111234 (-) True igsf9ba
XM_043259249.1 mRNA downstream 106826 11045951 ~ 11072510 (-) False arhgap32a
XM_043258499.1 mRNA upstream 50 11185150 ~ 11187283 (-) True LOC122358618
XM_043258500.1 mRNA upstream 2319 11187419 ~ 11192049 (-) True si:ch211-213d14.1
XM_043258501.1 mRNA upstream 117130 11302230 ~ 11304810 (-) True LOC122358622
XM_043258502.1 mRNA upstream 141412 11326512 ~ 11342116 (-) True LOC122358625
XM_043258503.1 mRNA upstream 168546 11353646 ~ 11357553 (-) True LOC122358627
TU156055 other downstream 86623 11085819 ~ 11092713 (-) False igsf9ba
TU155899 other downstream 518186 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 665274 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 975923 10203327 ~ 10203413 (-) True trnastop-uca
TU155453 other downstream 1382446 9793748 ~ 9796890 (-) False dynll2a
TU156117 other upstream 118321 11303421 ~ 11304562 (-) False LOC122358622
TU156125 other upstream 144802 11329902 ~ 11331898 (-) False LOC122358625
TU156138 other upstream 168741 11353841 ~ 11357548 (-) False LOC122358627
TU156053 other upstream 279675 11464775 ~ 11506177 (-) False igsf9ba
XR_006252707.1 other upstream 2270881 13455981 ~ 13461103 (-) False ercc2

Expression Profile