RNA id: TU156125



Basic Information


Item Value
RNA id TU156125
length 1055
RNA type TUCP
GC content 0.44
exon number 10
gene id LOC122358625
representative False

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11326512 ~ 11342116 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


NNNNNGTGACTCCAGCTCCTTCTTCAGAGTACACTCTCAAAGCCTCCTCTGATGATCAGTATTCATCCTGTCTGTGTGCTAATGGaagaaaaacctttaaatggatCCTCACTCCTTCTGTTCTTGGAGTCTTGAATATTACAGTCAGTGCAGAGGCAGAGGCGTCCCAGACTGTGTGTGACAACGAGATTGTGAGTGTGCCAGAGAGAGGACGCATTGACATAGTCACAAGAAGTCTGCTTGTACAGGCTGAAGGAACTGAAAAGACAGAGACCTACAGCTGGTTACTGTGTCCAAAAGGTGACAGTCTCTCAGAGGAAGTGGATCTCACTCTTCCTAAAGATGTCATAGAGGGATCAGTCAGATCATCTGTTTCAGTCATTGGAGACATATTGGGTCGTGCACTGACAAATCTTCATGGATTATTACGGATGCCATACGGCTGTGGAGAACAAAACATGGCTGTTCTTTCTCCTAATATTTACATTCTGCAGTATCTGGAAAATACAGAACAGCTAACCTCAGCCATCCGAGAGAGAGCCACCGGCTTCCTTAAGAGTGGATATCAGAGACAATTGAACTACAAGCATTCCGATGGTGCATACAGCACATTCGGTTATGGTGATGGGAATACatgGTTGACTGCCTTTGTCCTGAGGTCTTTTGGCaaagcacaaaaatacatatttgttgATCCACATATTATTCAGATCGCAAAGGAATGGTTAATAATCAGACAGGATTCAGATGGCTGTTTCATCCAACAGGGAAGACTTTTCAACAACAGAATGAAGGGTGGAGTAAATGATAATGTGACCATGACTGCTTACATTACTGCATCACTGCTTGAACTTGAAACTCCAGTCACAGATCCTGTCGTCTCTAAAGGTTTGTCATGCTTGAAGTCTGTCATTGAGGAtgtcaaaaacacatacacCACTGCTCTACTCGCCTACACTTTCAGTCTGGCTGGAGACACAGACACTCGACAGCAGCTCTTCAAGAAACTGGATGATGTTGCCATTTCAGAGGGGTCTGCTCTCCACTGGTCTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006252684.1 lncRNA downstream 3905 11325275 ~ 11325997 (-) True LOC122359088
TU156122 lncRNA downstream 23388 11304983 ~ 11306514 (-) True G105694
TU156092 lncRNA downstream 158163 11169121 ~ 11171739 (-) True G105674
TU156066 lncRNA downstream 212612 11073281 ~ 11117290 (-) False igsf9ba
TU156047 lncRNA downstream 301124 10969169 ~ 11028778 (-) True G105653
XR_006252603.1 lncRNA upstream 89956 11421854 ~ 11425407 (-) True LOC122358449
TU156059 lncRNA upstream 128482 11460380 ~ 11464483 (-) False igsf9ba
XR_006252620.1 lncRNA upstream 180748 11512646 ~ 11513531 (-) True LOC122358535
XR_006252619.1 lncRNA upstream 180748 11512646 ~ 11513255 (-) False LOC122358535
XR_006252636.1 lncRNA upstream 193968 11525866 ~ 11526684 (-) True LOC122358725
XM_043258501.1 mRNA downstream 25092 11302230 ~ 11304810 (-) True LOC122358622
XM_043258500.1 mRNA downstream 137853 11187419 ~ 11192049 (-) True si:ch211-213d14.1
XM_043258499.1 mRNA downstream 142619 11185150 ~ 11187283 (-) True LOC122358618
XM_043259281.1 mRNA downstream 144802 11179336 ~ 11185100 (-) False LOC122359110
XM_043258503.1 mRNA upstream 21748 11353646 ~ 11357553 (-) True LOC122358627
XM_043258278.1 mRNA upstream 200543 11532441 ~ 11533631 (-) True LOC122358470
XM_043258506.1 mRNA upstream 208175 11540073 ~ 11541164 (-) True LOC122358629
XM_043259881.1 mRNA upstream 213324 11545222 ~ 11546883 (-) True LOC122359552
XM_043258507.1 mRNA upstream 221003 11552901 ~ 11554310 (-) True LOC122358630
TU156117 other downstream 25340 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 237189 11085819 ~ 11092713 (-) False igsf9ba
TU155899 other downstream 668752 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 815840 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 1126489 10203327 ~ 10203413 (-) True trnastop-uca
TU156138 other upstream 21943 11353841 ~ 11357548 (-) False LOC122358627
TU156053 other upstream 132877 11464775 ~ 11506177 (-) False igsf9ba
XR_006252707.1 other upstream 2124083 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 2415138 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 2546687 13878585 ~ 13881694 (-) True G106570

Expression Profile