RNA id: TU156117



Basic Information


Item Value
RNA id TU156117
length 987
RNA type TUCP
GC content 0.53
exon number 2
gene id LOC122358622
representative False

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11302230 ~ 11304810 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAATGCAAACCAACCTGAAACAAATCCCAGGCTGGTTTCCCTAGCAACCGGAGATCTCGACCTGCGAGGCTTCTGTGGGGGCTCCGTGAGCCGACCGAAAATGTCTCGCCCCGGCCCCTACAGCTACATTCGGACACACTGCAACAGCCAAAGAATATCAACGAACGGATGCAAGGACGTGGAGGTGTTCGAGAAGGAGACGTGGACTTTCAAAGGGACTCATTCAGGTTACGCGGAGCTGGCGTTTGACCAGTGCTCTGTCGACAAATCCTTCGGAAAGAGCCACGCGAGCGCGAAGAAGGTTCGCGAATGTGCCATACTGTTGAAGGAAGAAGAGAAAAGTTGCTTCACGGAAGACGTGTTTTACCGAGCGGAGATGATGAGAAGTTACGATCTCGGCGGCTCCCTGGAGCCGCACCACAGACGGGAGGGCCAGAGCCACGGGATGAAGATGCTCGGCCACGACGGGATTGCTATGCCCGTTTTGCAGTGCGCAGAGAACGAGAGCTGTCCGCCGTATAAACAATCCGAAGTAGCCGAGTGCTACTTTCATCAGATAACTGCCAATTTAGAGCCATATCACGGCTTCATGAATGAAATcgatcagccaatcagaactgGGGCTCTTGATATCCAGAATAATGACTACTTGCACCACGAATGCCTTGGGGATCAAAGCTTTGAATGTCTGTCCGGAGACAGTGTTGGGTCCTCTTTGGAGTTGCCCATCCAGAAACCACTGCAAAGGTCACGGGAAAGTCAGTGCGCGTTTAAGCCAGATGTTAAAGTAGGTTGCTCGGAGAGAAACCATGGAGAACGCAAGCAGAAGAAGAGGGATCAGAACAAGTCCGCCGCCCACAGGTACCGTCAGCGTAAGAGGGCGGAGCAGGACTGTTTGGAGGAGGAGCTTCATGGTTTGGAAGGGCGGAACAGAGAACTTCGGGACAAAGCAGAAtctgtagagagagagattcagtATGTGAAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156092 lncRNA downstream 131682 11169121 ~ 11171739 (-) True G105674
TU156066 lncRNA downstream 186131 11073281 ~ 11117290 (-) False igsf9ba
TU156047 lncRNA downstream 274643 10969169 ~ 11028778 (-) True G105653
TU155793 lncRNA downstream 791158 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 791194 10475572 ~ 10512227 (-) False G105497
TU156122 lncRNA upstream 421 11304983 ~ 11306514 (-) True G105694
XR_006252684.1 lncRNA upstream 20713 11325275 ~ 11325997 (-) True LOC122359088
XR_006252603.1 lncRNA upstream 117292 11421854 ~ 11425407 (-) True LOC122358449
TU156059 lncRNA upstream 155818 11460380 ~ 11464483 (-) False igsf9ba
XR_006252620.1 lncRNA upstream 208084 11512646 ~ 11513531 (-) True LOC122358535
XM_043258500.1 mRNA downstream 111372 11187419 ~ 11192049 (-) True si:ch211-213d14.1
XM_043258499.1 mRNA downstream 116138 11185150 ~ 11187283 (-) True LOC122358618
XM_043259281.1 mRNA downstream 118321 11179336 ~ 11185100 (-) False LOC122359110
XM_043259279.1 mRNA downstream 118321 11179336 ~ 11185100 (-) True LOC122359110
XM_043259278.1 mRNA downstream 121477 11179336 ~ 11181944 (-) False LOC122359110
XM_043258502.1 mRNA upstream 21950 11326512 ~ 11342116 (-) True LOC122358625
XM_043258503.1 mRNA upstream 49084 11353646 ~ 11357553 (-) True LOC122358627
XM_043258278.1 mRNA upstream 227879 11532441 ~ 11533631 (-) True LOC122358470
XM_043258506.1 mRNA upstream 235511 11540073 ~ 11541164 (-) True LOC122358629
XM_043259881.1 mRNA upstream 240660 11545222 ~ 11546883 (-) True LOC122359552
TU156055 other downstream 210708 11085819 ~ 11092713 (-) False igsf9ba
TU155899 other downstream 642271 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 789359 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 1100008 10203327 ~ 10203413 (-) True trnastop-uca
TU155454 other downstream 1506531 9763871 ~ 9796890 (-) True dynll2a
TU156125 other upstream 25340 11329902 ~ 11331898 (-) False LOC122358625
TU156138 other upstream 49279 11353841 ~ 11357548 (-) False LOC122358627
TU156053 other upstream 160213 11464775 ~ 11506177 (-) False igsf9ba
XR_006252707.1 other upstream 2151419 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 2442474 13747036 ~ 13749209 (-) False LOC122359192

Expression Profile