RNA id: XM_043258499.1


Basic Information

Item Value
RNA id XM_043258499.1
length 1399
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122358618
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11185150 ~ 11187283 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGACAAAAGGACTCCTGGGAGGCCCGCCAGCGACGGGTGGAGGCGTTGTGTGGAGACGTCCTGGCTCCCATGCCCCTGTCCGCACCCAGCGCCCTGGTCAACCCCGACACCGTCAGCCCGACCCAGTTCCGCTCGTCGTCCCGGGGCTCGAGCATGACGTCCTCGCAGTCGTACTCCCTCCATTCACTGGATGAAGTCAATTATCACTCCTCATTTCAACCCGCCTCTGGCAGCTTTGCCTCCCCTTCGTTTATGACTGAGCCTGCGACCAAACTGGTGCCAGGGCTACCCTCGGAAGACGCCGAAAGCGCCCCTTCGGCCCTGAGCGACAGCCTGGTATGGGGCAAGGAGGACACTAGTAGCACTTGGTCACAGTATGAGGTCCGAAGGGCATTCTGAGACTGAATTAAAAGGAAACGAAGGCTGGCCTGGCAGCCTAGCAGATCAACATCTCTTTAATACGTAACAATTAGCACTACAATCTTTTTTTGCTTAGCGGAGCTAAGACTTAACATTGAGGAACAAATTATATCTTCAATTTAACGTTTTGACTGTATCGTTTATCATTACCGCATCTTCTCTTTCCACCGTTACAGCTTATATTGGGATGATAATCAGTATAAGGAGTCTGTAtatcagattttgttttttttatttctgtgacacGCAAGTGACAGTGagtctatataaatgtatattgtccgcaaaaattaagtgttacGATATTTATAGCTGATAGCCCTATTTCTCTTCTCCTgagttttacatttcaaaagcatGTCGTGAAAATGGTTTAAAGGTAAATGAACTagaattctgtaaaaaaaacaaaaaaacaacaacaaaaaaaaaacatttgaatgaaacctcaaactttttattgaataaatgtacaaagataaaaaaaaaaaaaaagtttttcattattatatattcgtATTTATTGAAATGCAATGTAGAGGATAAGGAAAAAgtacatacaaaataatttgaaaaagatgtgttttctttctttcagattTTGTAGATAAAGAGATCTGACTTCTAAAGTAAGACCTTGTAAAATAAAccatataaaattaataaatgaccGAATGATTTTTCTGAtgctttattataataacaaataaagagTTCAGACgcaaacatttctaaaatttgttttctaaaattaggatttttgctgtatttatgtTCAGGTATTTCATTTTACAGGACCTATGCATTTCCATTAGAATAAACCTGAGCCCGATAAAAACGCTCCTCCAAGATTTCAGATGGCACTCATGGCTCATGCATCTGAACAAATCTCGCAAATATTCTTTTAGGACTAAAGCAAAGGTGTTATTCCAGGCCTGTACTGAAATGAGAGCACGAATCAGACCGCATCcgcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156092 lncRNA downstream 13411 11169121 ~ 11171739 (-) True G105674
TU156066 lncRNA downstream 67860 11073281 ~ 11117290 (-) False igsf9ba
TU156047 lncRNA downstream 156372 10969169 ~ 11028778 (-) True G105653
TU155793 lncRNA downstream 672887 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 672923 10475572 ~ 10512227 (-) False G105497
TU156122 lncRNA upstream 117700 11304983 ~ 11306514 (-) True G105694
XR_006252684.1 lncRNA upstream 137992 11325275 ~ 11325997 (-) True LOC122359088
XR_006252603.1 lncRNA upstream 234571 11421854 ~ 11425407 (-) True LOC122358449
TU156059 lncRNA upstream 273097 11460380 ~ 11464483 (-) False igsf9ba
XR_006252620.1 lncRNA upstream 325363 11512646 ~ 11513531 (-) True LOC122358535
XM_043259281.1 mRNA downstream 50 11179336 ~ 11185100 (-) False LOC122359110
XM_043259279.1 mRNA downstream 50 11179336 ~ 11185100 (-) True LOC122359110
XM_043259278.1 mRNA downstream 3206 11179336 ~ 11181944 (-) False LOC122359110
XM_043258498.1 mRNA downstream 73916 11073281 ~ 11111234 (-) True igsf9ba
XM_043259249.1 mRNA downstream 112640 11045951 ~ 11072510 (-) False arhgap32a
XM_043258500.1 mRNA upstream 136 11187419 ~ 11192049 (-) True si:ch211-213d14.1
XM_043258501.1 mRNA upstream 114947 11302230 ~ 11304810 (-) True LOC122358622
XM_043258502.1 mRNA upstream 139229 11326512 ~ 11342116 (-) True LOC122358625
XM_043258503.1 mRNA upstream 166363 11353646 ~ 11357553 (-) True LOC122358627
XM_043258278.1 mRNA upstream 345158 11532441 ~ 11533631 (-) True LOC122358470
TU156055 other downstream 92437 11085819 ~ 11092713 (-) False igsf9ba
TU155899 other downstream 524000 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 671088 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 981737 10203327 ~ 10203413 (-) True trnastop-uca
TU155453 other downstream 1388260 9793748 ~ 9796890 (-) False dynll2a
TU156117 other upstream 116138 11303421 ~ 11304562 (-) False LOC122358622
TU156125 other upstream 142619 11329902 ~ 11331898 (-) False LOC122358625
TU156138 other upstream 166558 11353841 ~ 11357548 (-) False LOC122358627
TU156053 other upstream 277492 11464775 ~ 11506177 (-) False igsf9ba
XR_006252707.1 other upstream 2268698 13455981 ~ 13461103 (-) False ercc2

Expression Profile