RNA id: XR_006252603.1



Basic Information


Item Value
RNA id XR_006252603.1
length 966
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id LOC122358449
representative True

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11421854 ~ 11425407 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TATATAAGATCCTCATGTGAACTACaggttaataaataaacaaggcaCTCTGaaggtgagtgagtgtgtacaAGACATGAGCTGTAACTGTAAACCTGCAGTATATCACCTCCATCGCTCCGAGCAGGGCTGTAAACGGCTTCTACTGGAAGGCTCCATTAGGAGCTGAGTGACAGGAAGTGATCTATGCAGATGGAGCGGACTGAGCGTATTGACTGCGGCAGATGTGCTTAGAGTGACGAGACGGAAAGACCAGACTTTGACAACACTGATGTGTCCATACACGGATTCACTGAAAGAGACTAATTAACCAGGGAGCACCGAGGGCTTTGCATCTTTGCACCTAGTATCGACGGGACACGATGACCACAGTAGCGAAGAAAGGACAAACACTGACAGTGAAGGACGCTTGCTAGCTTCTCCTGACTGTCCCTGACAGGACATTTTGGAAGAGGAGCGGGTCCAGTCTTATTCCCTGCACGTCGAGAGCTTTAGCCAGAGGAGACTGGCCTTATTGTTCCTCCCACACAATATCCCAAGGTGTGTGAAGTCCCGCCGGACGGCTGACACAATCCTCCCCGGCCTGTTCCATCACCATCCTGTCACTGACAGACACATCGCACTGATGACCCAGACGAGAGCAGCCATGGAAGCAGGGAAAATAATGGAGGACCACCGGCCTTCACACCACTGTTCTCAAAGCACACGCTAAGGACATGCACATACTTTTATGTGGGAGTTCACTGGCTCTGCAGCATCTCCACGCCTCAGCCGTCAAACAGCTTGCAAGACATCACAAACGTGACCTTTAGGGAATACGCTGCAGTGCCGTGGAGTGAAGGAGGAGAAGAGCAGCCACGGGGCTGGAGAATAACCTTGCTAAGAGCGGTCACGAAGGAAAAACAGCAGCCAGCCATCACTTCCTGTTCATCAATCGCCGGTGAGCGACAGTGGCAGGCAGAATAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006252684.1 lncRNA downstream 95857 11325275 ~ 11325997 (-) True LOC122359088
TU156122 lncRNA downstream 115340 11304983 ~ 11306514 (-) True G105694
TU156092 lncRNA downstream 250115 11169121 ~ 11171739 (-) True G105674
TU156066 lncRNA downstream 304564 11073281 ~ 11117290 (-) False igsf9ba
TU156047 lncRNA downstream 393076 10969169 ~ 11028778 (-) True G105653
TU156059 lncRNA upstream 34973 11460380 ~ 11464483 (-) False igsf9ba
XR_006252620.1 lncRNA upstream 87239 11512646 ~ 11513531 (-) True LOC122358535
XR_006252619.1 lncRNA upstream 87239 11512646 ~ 11513255 (-) False LOC122358535
XR_006252636.1 lncRNA upstream 100459 11525866 ~ 11526684 (-) True LOC122358725
XR_006252606.1 lncRNA upstream 113505 11538912 ~ 11539834 (-) True LOC122358462
XM_043258503.1 mRNA downstream 64301 11353646 ~ 11357553 (-) True LOC122358627
XM_043258502.1 mRNA downstream 79738 11326512 ~ 11342116 (-) True LOC122358625
XM_043258501.1 mRNA downstream 117044 11302230 ~ 11304810 (-) True LOC122358622
XM_043258500.1 mRNA downstream 229805 11187419 ~ 11192049 (-) True si:ch211-213d14.1
XM_043258499.1 mRNA downstream 234571 11185150 ~ 11187283 (-) True LOC122358618
XM_043258278.1 mRNA upstream 107034 11532441 ~ 11533631 (-) True LOC122358470
XM_043258506.1 mRNA upstream 114666 11540073 ~ 11541164 (-) True LOC122358629
XM_043259881.1 mRNA upstream 119815 11545222 ~ 11546883 (-) True LOC122359552
XM_043258507.1 mRNA upstream 127494 11552901 ~ 11554310 (-) True LOC122358630
XM_043259584.1 mRNA upstream 148090 11573497 ~ 11575403 (-) True thyn1
TU156138 other downstream 64306 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 89956 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 117292 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 329141 11085819 ~ 11092713 (-) False igsf9ba
TU155899 other downstream 760704 10658937 ~ 10661150 (-) False cryaba
TU156053 other upstream 39368 11464775 ~ 11506177 (-) False igsf9ba
XR_006252707.1 other upstream 2030574 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 2321629 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 2453178 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 2458513 13883920 ~ 13905494 (-) True G106571

Expression Profile