ercc2 (ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444)


Basic Information

Item Value
gene id ercc2
gene name ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13454482 ~ 13461103 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259824.1
TTTTCGTGCTACTGAGACCGCCTGTGTGACTCGATAGAAGTCTGTTGTGTAAAATACATATGACAGTTAGTGCTGTATAAATGTGTGACATTCTGGAAAACTGAACGACAGAAACACCCAAGTGCTGCAAATTACAGCCAACATGAAGCTGAATATCGAGGGGTTATTAGTCTACTTTCCGTATGACTACATTTATCCTGAACAATATTCGTACATGCTTGAGCTGAAGAGGACGCTGGACGCAAAGGGACATGGAGTTCTCGAGATGCCTTCAGGAACAGGAAAAACTATTTCTCTTCTTTCCCTCATTGTTGCTTACCAGAAGGCTTACCCTTTAGAAGTCACCAAGCTTGTCTACTGTTCTCGCACTGTGCCCGAGATCGAGAAGGTGGTAGAGGAGCTAAGGAAACTAATGGATTATTATGCAAAACAAACAGGGGTGAAAAATGATTTCCTTGCACTGGCGCTTTCTTCACGGAAAAATCTGTGCATTCATCCTGAGGTGAGTTCTCTGCGTTTTGGAAAAGAAGTGGATGGAAAGTGTCACAGTCTGACAGCGTCGTATATTCGAGCGCAGCATCACAGTAACCCAAGTCAACCTGTCTGCCAGTTCTATGAGGAATTTGATGCAGTAGGCAGGCAGGTTCCCATTCCCCCTGGTATATATAACTTGGATGATCTGAAGGACTTTGGGCGCAGAAAAGGCTGGTGTCCGTACTTCTTGGCACGTTATGCAattcTTCACGCAAACATTGTAGTGTACAGCTACCATTACTTACTTGATCCAAAAATTGCAGATCTGGTCTCAAAAGAGCTCGCAAAGAAATCTGTGGTTGTGTTCGATGAGGCTCACAACATCGACAATGTGTGTATCGATTCCATGAGCGTCAACATTACAAGGAGGACTCTGGATCGCTGTCAGACTAATGTGGAAACCCTGCAAAACACCATTAGCAGAATTAAGGAAACAGATGCTGCAAAACTTAGAGAAGAATACAGGAGATTAGTTGAAGGTCTTAAAGAAGCAAATGTTGCAAGAGAAACTGACGTCTATCTGTCCAACCCAGTTCTTCCAGATGAAATCCTGCAAGAGGCTGTACCTGGCAGCATTCGCACTGCTGAGCACTTTGTGGGCTTTATGAAGCGCTTCCTGGAGTACCTGAAGGCACGTTTGCGAATCCATCACGTGGTTCAGGAGAGCGCCCCTCAGTTCCTCAAAGACATCTTTGAGAAGGTCTGCATTGACCGCAAACCCCTGAGATTTTGTGCTGAGCGGCTGCGCTCGCTGCTGAGGACGCTGGAGATCGCAGACATCGCTGACTTCTCAGCCATTACCCTGATCTCACACTTTGCCACACTCGTCAGCACCTACAGCAAAGGCTTCACCATCATCATTGAGCCCTTTGAAGATAAAACGCCAACAATAGCAAATCCTGTTCTTCACTTCAGTTGCATGGACCCCTCTATCGCCATAAAGCCTGTGTTTGGGCGCTTTCAATCAGTCATTATCACATCAGGGACTCTCTCTCCTCTGGACATCTATCCACGCATCCTTGATTTCCACCCAGTCACTATGGCATCCTTCACCATGACACTGGCACGAACCTGCCTGTGCCCTCTTATTGTAGGCAGAGGGAATGATCAAGTAGCGATGACCTCCAAGTTTGAGACCAGAGAAGATTTTGCTGTGATCCGGAATTATGGAAACCTGCTGCTGGAAATGTCTGCCATTGTTCCTGATGGGATCGTTGCGTTCTTCACGAGTTACATATACATGGAGAACATTGTGGCCTCATGGTATGAACAGGGCATCCTAGAGAACATCCaaagaaacaagctcattttCATAGAAACCCAGGATGCAGCCGAAACTAGCATGGCCCTGGAGAAGTATCAAGAGGCCTGCGAGAACGGCAGAGGAGCAATTCTACTCTCGGTGGCAAGAGGAAAAGTGTCAGAGGGGATTGACTTTGTTCATCATTTTGGCCGTGCCGTTATCATGTTTGGAGTGCCGTATGTTTACACCCAGAGCCGAATCCTCAAGGCGCGGTTGGAATACCTTAGAGATCAGTTTCAGATCCGGGAAAATGACTTTCTGACATTTGATGCAATGCGCCATGCGGCTCAGTGTGTGGGCAGAGCCATCCGAGGCAAAACTGACTACGGCTTGATGGTCTTTGCAGACAAGCGTTATGCACGTGCGGATAAGCGAGGAAAGCTGCCCCGCTGGATCCAGGAACACCTTACGGATGGAAGCCTAAATCTGACCATTGATGAGACCGTGCAGTTATCCAAGCACTTTCTACGACAGATGGCCCAGCCCTTCAGACGGGAGGATCAGTTGGGTCTGTCTCTGCTGACCCTGGAGCAACTGCAGTCTGAGGATATGCTTAAGAAAATTGCTCAGATCGCGCAACAAGCCTGAGGTCTCAAAAGGAACAAAGTCTGggagatgtgtatatatatattctttttttatgattctttaatatgttttttttacaacaagcattaataaatgctaatctTCAACTAGTGTTCTATA
>XR_006252707.1
TTTTCGTGCTACTGAGACCGCCTGTGTGACTCGATAGAAGTCTGTTGTGTAAAATACATATGACAGTTAGTGCTGTATAAATGTGTGACATTCTGGAAAACTGAACGACAGAAACACCCAAGTGCTGCAAATTACAGCCAACATGAAGCTGAATATCGAGGGGTTATTAGTCTACTTTCCGTATGACTACATTTATCCTGAACAATATTCGTACATGCTTGAGCTGAAGAGGACGCTGGACGCAAAGGGACATGGAGTTCTCGAGATGCCTTCAGGAACAGGAAAAACTATTTCTCTTCTTTCCCTCATTGTTGCTTACCAGAAGGCTTACCCTTTAGAAGTCACCAAGCTTGTCTACTGTTCTCGCACTGTGCCCGAGATCGAGAAGGTGGTAGAGGAGCTAAGGAAACTAATGGATTATTATGCAAAACAAACAGGGGTGAAAAATGATTTCCTTGCACTGGCGCTTTCTTCACGGAAAAATCTGTGCATTCATCCTGAGGTGAGTTCTCTGCGTTTTGGAAAAGAAGTGGATGGAAAGTGTCACAGTCTGACAGCGTCGTATATTCGAGCGCAGCATCACAGTAACCCAAGTCAACCTGTCTGCCAGTTCTATGAGGAATTTGATGCAGTAGGCAGGCAGGTTCCCATTCCCCCTGGTATATATAACTTGGATGATCTGAAGGACTTTGGGCGCAGAAAAGGCTGGTGTCCGTACTTCTTGGCACGTTATGCAattcTTCACGCAAACATTGTAGTGTACAGCTACCATTACTTACTTGATCCAAAAATTGCAGATCTGGTCTCAAAAGAGCTCGCAAAGAAATCTGTGGTTGTGTTCGATGAGGCTCACAACATCGACAATGTGTGTATCGATTCCATGAGCGTCAACATTACAAGGAGGACTCTGGATCGCTGTCAGACTAATGTGGAAACCCTGCAAAACACCATTAGCAGAATTAAGGAAACAGATGCTGCAAAACTTAGAGAAGAATACAGGAGATTAGTTGAAGGTCTTAAAGAAGCAAATGTTGCAAGAGAAACTGACGTCTATCTGTCCAACCCAGTTCTTCCAGATGAAATCCTGCAAGAGGCTGTACCTGGCAGCATTCGCACTGCTGAGCACTTTGTGGGCTTTATGAAGCGCTTCCTGGAGTACCTGAAGGCACGTTTGCGAATCCATCACGTGGTTCAGGAGAGCGCCCCTCAGTTCCTCAAAGACATCTTTGAGAAGGTCTGCATTGACCGCAAACCCCTGAGATTTTGTGCTGAGCGGCTGCGCTCGCTGCTGAGGACGCTGGAGATCGCAGACATCGCTGACTTCTCAGCCATTACCCTGATCTCACACTTTGCCACACTCGTCAGCACCTACAGCAAAGGCTTCACCATCATCATTGAGCCCTTTGAAGATAAAACGCCAACAATAGCAAATCCTGTTCTTCACTTCAGTTGCATGGACCCCTCTATCGCCATAAAGCCTGTGTTTGGGCGCTTTCAATCAGTCATTATCACATCAGGGACTCTCTCTCCTCTGGACATCTATCCACGCATCCTTGATTTCCACCCAGTCACTATGGCATCCTTCACCATGACACTGGCACGAACCTGCCTGTGCCCTCTTATTGTAGGCAGAGGGAATGATCAAGTAGCGATGACCTCCAAGTTTGAGACCAGAGAAGATTTTGCTGTGATCCGGAATTATGGAAACCTGCTGCTGGAAATGTCTGCCATTGTTCCTGATGGGATCGTTGCGTTCTTCACGAGTTACATATACATGGAGAACATTGTGGCCTCATGGGCATCCTAGAGAACATCCaaagaaacaagctcattttCATAGAAACCCAGGATGCAGCCGAAACTAGCATGGCCCTGGAGAAGTATCAAGAGGCCTGCGAGAACGGCAGAGGAGCAATTCTACTCTCGGTGGCAAGAGGAAAAGTGTC

Function

symbol description
ercc2 Predicted to enable DNA helicase activity and damaged DNA binding activity. Predicted to be involved in several processes, including nucleotide-excision repair; positive regulation of mitotic recombination; and transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; gonad; heart; male organism; and precaudal vertebra. Human ortholog(s) of this gene implicated in several diseases, including acoustic neuroma; acquired immunodeficiency syndrome; carcinoma (multiple); hematologic cancer (multiple); and xeroderma pigmentosum (multiple). Orthologous to human ERCC2 (ERCC excision repair 2, TFIIH core complex helicase subunit).

NR:

description
TFIIH basal transcription factor complex helicase XPD subunit

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10844 ERCC2, XPD; DNA excision repair protein ERCC-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259824.1 True 2545 mRNA 0.46 23 13454482 13461103
XR_006252707.1 False 1946 transcript 0.46 19 13455981 13461103

Neighbor

gene id symbol gene type direction distance location
ckmb ckmb,ckm,LOC107718278,LOC107690449,LOC107601735,LOC107585550,LOC107743697 coding downstream 14669 13436675 ~ 13439813 (-)
si:dkey-182i3.11 LOC107683826,LOC107743701 coding downstream 55535 13395061 ~ 13398947 (-)
hmbsb hmbsb,LOC107683832,LOC107743703,LOC108427930,LOC107718294 coding downstream 74903 13374962 ~ 13379579 (-)
abcg4b abcg4b,LOC107585553,LOC107683844,LOC108439979,LOC103370335,LOC104937503 coding downstream 81036 13363504 ~ 13373446 (-)
nlrx1 nlrx1,LOC107690451,LOC107718274 coding downstream 91628 13354101 ~ 13362854 (-)
zgc:154093 LOC107743693,LOC107585559,LOC107718281,LOC107683833,LOC107690442,LOC107690441,LOC107601736 coding upstream 537 13461640 ~ 13463362 (-)
zc3h4 zc3h4,LOC107585556,LOC107683834,LOC107743691,LOC107718283,LOC107601737,LOC107690443 coding upstream 8475 13469578 ~ 13480565 (-)
bbc3 LOC107743728 coding upstream 30450 13491553 ~ 13501031 (-)
rad1 rad1,LOC107601739,LOC107585563,LOC107743754,LOC107690438,LOC107718285 coding upstream 47073 13508176 ~ 13510935 (-)
tmem97 tmem97,LOC107585564,LOC107743752,LOC107690436,LOC107718286 coding upstream 52265 13513368 ~ 13514692 (-)
G106442 NA non-coding downstream 509109 12945087 ~ 12945373 (-)
G106211 LOC107709112 non-coding downstream 614085 12838764 ~ 12840397 (-)
G106184 NA non-coding downstream 713408 12738051 ~ 12741074 (-)
G106137 LOC107657248,LOC107601702,LOC107709130,LOC107586283 non-coding downstream 782034 12672187 ~ 12672448 (-)
G106099 NA non-coding downstream 855909 12598286 ~ 12598573 (-)
G106525 NA non-coding upstream 145081 13606184 ~ 13606897 (-)
G106541 NA non-coding upstream 206468 13667571 ~ 13669379 (-)
G106548 NA non-coding upstream 292219 13753322 ~ 13756160 (-)
G106561 NA non-coding upstream 324075 13785178 ~ 13798248 (-)
G106572 LOC107664934,LOC107743664,LOC107585584,LOC103047044,LOC107744786,LOC107592620,LOC107690414 non-coding upstream 356285 13817388 ~ 13817880 (-)
LOC122359155 LOC107662800,LOC107729090,LOC107586245,LOC107586286 other downstream 1164430 12280291 ~ 12290052 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other downstream 1420888 12030648 ~ 12033594 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other downstream 1598587 11842766 ~ 11855895 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other downstream 2096929 11353646 ~ 11357553 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other downstream 2112366 11326512 ~ 11342116 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other upstream 283452 13744555 ~ 13751057 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other upstream 417482 13878585 ~ 13881694 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other upstream 422817 13883920 ~ 13905494 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other upstream 447703 13908806 ~ 13925727 (-)
mmp20a NA other upstream 542638 14003741 ~ 14009286 (-)

Expression


Co-expression Network