RNA id: XM_043259824.1


Basic Information

Item Value
RNA id XM_043259824.1
length 2545
RNA type mRNA
GC content 0.46
exon number 23
gene id ercc2
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13454482 ~ 13461103 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTCGTGCTACTGAGACCGCCTGTGTGACTCGATAGAAGTCTGTTGTGTAAAATACATATGACAGTTAGTGCTGTATAAATGTGTGACATTCTGGAAAACTGAACGACAGAAACACCCAAGTGCTGCAAATTACAGCCAACATGAAGCTGAATATCGAGGGGTTATTAGTCTACTTTCCGTATGACTACATTTATCCTGAACAATATTCGTACATGCTTGAGCTGAAGAGGACGCTGGACGCAAAGGGACATGGAGTTCTCGAGATGCCTTCAGGAACAGGAAAAACTATTTCTCTTCTTTCCCTCATTGTTGCTTACCAGAAGGCTTACCCTTTAGAAGTCACCAAGCTTGTCTACTGTTCTCGCACTGTGCCCGAGATCGAGAAGGTGGTAGAGGAGCTAAGGAAACTAATGGATTATTATGCAAAACAAACAGGGGTGAAAAATGATTTCCTTGCACTGGCGCTTTCTTCACGGAAAAATCTGTGCATTCATCCTGAGGTGAGTTCTCTGCGTTTTGGAAAAGAAGTGGATGGAAAGTGTCACAGTCTGACAGCGTCGTATATTCGAGCGCAGCATCACAGTAACCCAAGTCAACCTGTCTGCCAGTTCTATGAGGAATTTGATGCAGTAGGCAGGCAGGTTCCCATTCCCCCTGGTATATATAACTTGGATGATCTGAAGGACTTTGGGCGCAGAAAAGGCTGGTGTCCGTACTTCTTGGCACGTTATGCAattcTTCACGCAAACATTGTAGTGTACAGCTACCATTACTTACTTGATCCAAAAATTGCAGATCTGGTCTCAAAAGAGCTCGCAAAGAAATCTGTGGTTGTGTTCGATGAGGCTCACAACATCGACAATGTGTGTATCGATTCCATGAGCGTCAACATTACAAGGAGGACTCTGGATCGCTGTCAGACTAATGTGGAAACCCTGCAAAACACCATTAGCAGAATTAAGGAAACAGATGCTGCAAAACTTAGAGAAGAATACAGGAGATTAGTTGAAGGTCTTAAAGAAGCAAATGTTGCAAGAGAAACTGACGTCTATCTGTCCAACCCAGTTCTTCCAGATGAAATCCTGCAAGAGGCTGTACCTGGCAGCATTCGCACTGCTGAGCACTTTGTGGGCTTTATGAAGCGCTTCCTGGAGTACCTGAAGGCACGTTTGCGAATCCATCACGTGGTTCAGGAGAGCGCCCCTCAGTTCCTCAAAGACATCTTTGAGAAGGTCTGCATTGACCGCAAACCCCTGAGATTTTGTGCTGAGCGGCTGCGCTCGCTGCTGAGGACGCTGGAGATCGCAGACATCGCTGACTTCTCAGCCATTACCCTGATCTCACACTTTGCCACACTCGTCAGCACCTACAGCAAAGGCTTCACCATCATCATTGAGCCCTTTGAAGATAAAACGCCAACAATAGCAAATCCTGTTCTTCACTTCAGTTGCATGGACCCCTCTATCGCCATAAAGCCTGTGTTTGGGCGCTTTCAATCAGTCATTATCACATCAGGGACTCTCTCTCCTCTGGACATCTATCCACGCATCCTTGATTTCCACCCAGTCACTATGGCATCCTTCACCATGACACTGGCACGAACCTGCCTGTGCCCTCTTATTGTAGGCAGAGGGAATGATCAAGTAGCGATGACCTCCAAGTTTGAGACCAGAGAAGATTTTGCTGTGATCCGGAATTATGGAAACCTGCTGCTGGAAATGTCTGCCATTGTTCCTGATGGGATCGTTGCGTTCTTCACGAGTTACATATACATGGAGAACATTGTGGCCTCATGGTATGAACAGGGCATCCTAGAGAACATCCaaagaaacaagctcattttCATAGAAACCCAGGATGCAGCCGAAACTAGCATGGCCCTGGAGAAGTATCAAGAGGCCTGCGAGAACGGCAGAGGAGCAATTCTACTCTCGGTGGCAAGAGGAAAAGTGTCAGAGGGGATTGACTTTGTTCATCATTTTGGCCGTGCCGTTATCATGTTTGGAGTGCCGTATGTTTACACCCAGAGCCGAATCCTCAAGGCGCGGTTGGAATACCTTAGAGATCAGTTTCAGATCCGGGAAAATGACTTTCTGACATTTGATGCAATGCGCCATGCGGCTCAGTGTGTGGGCAGAGCCATCCGAGGCAAAACTGACTACGGCTTGATGGTCTTTGCAGACAAGCGTTATGCACGTGCGGATAAGCGAGGAAAGCTGCCCCGCTGGATCCAGGAACACCTTACGGATGGAAGCCTAAATCTGACCATTGATGAGACCGTGCAGTTATCCAAGCACTTTCTACGACAGATGGCCCAGCCCTTCAGACGGGAGGATCAGTTGGGTCTGTCTCTGCTGACCCTGGAGCAACTGCAGTCTGAGGATATGCTTAAGAAAATTGCTCAGATCGCGCAACAAGCCTGAGGTCTCAAAAGGAACAAAGTCTGggagatgtgtatatatatattctttttttatgattctttaatatgttttttttacaacaagcattaataaatgctaatctTCAACTAGTGTTCTATA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10844 ERCC2, XPD; DNA excision repair protein ERCC-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157252 lncRNA downstream 509109 12945087 ~ 12945373 (-) True G106442
TU156916 lncRNA downstream 614085 12838764 ~ 12840397 (-) True G106211
TU156875 lncRNA downstream 713408 12738051 ~ 12741074 (-) True G106184
TU156805 lncRNA downstream 782034 12672187 ~ 12672448 (-) True G106137
TU156746 lncRNA downstream 855909 12598286 ~ 12598573 (-) True G106099
TU157380 lncRNA upstream 145081 13606184 ~ 13606897 (-) True G106525
TU157402 lncRNA upstream 206468 13667571 ~ 13669225 (-) False G106541
TU157403 lncRNA upstream 206468 13667571 ~ 13669225 (-) False G106541
TU157404 lncRNA upstream 206468 13667571 ~ 13669225 (-) False G106541
TU157405 lncRNA upstream 206468 13667571 ~ 13669225 (-) False G106541
XM_043258275.1 mRNA downstream 14669 13436675 ~ 13439813 (-) True ckmb
XM_043258303.1 mRNA downstream 55535 13395061 ~ 13398947 (-) True si:dkey-182i3.11
XM_043259784.1 mRNA downstream 74903 13374962 ~ 13379579 (-) True hmbsb
XM_043259783.1 mRNA downstream 75218 13374962 ~ 13379264 (-) False hmbsb
XM_043258298.1 mRNA downstream 81036 13363504 ~ 13373446 (-) False abcg4b
XM_043259843.1 mRNA upstream 537 13461640 ~ 13463362 (-) True zgc:154093
XM_043258591.1 mRNA upstream 8475 13469578 ~ 13480565 (-) False zc3h4
XM_043258592.1 mRNA upstream 8475 13469578 ~ 13480168 (-) True zc3h4
XM_043259746.1 mRNA upstream 30450 13491553 ~ 13501031 (-) True bbc3
XM_043258311.1 mRNA upstream 47073 13508176 ~ 13510935 (-) True rad1
TU156053 other downstream 1948305 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 2096934 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 2122584 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 2149920 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 2361769 11085819 ~ 11092713 (-) False igsf9ba
TU157426 other upstream 285933 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 417482 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 422817 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 458966 13920069 ~ 13925707 (-) False cluha
TU157568 other upstream 837241 14298344 ~ 14322397 (-) False LOC122359058

Expression Profile