rad1 (rad1,LOC107601739,LOC107585563,LOC107743754,LOC107690438,LOC107718285)


Basic Information

Item Value
gene id rad1
gene name rad1,LOC107601739,LOC107585563,LOC107743754,LOC107690438,LOC107718285
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13508176 ~ 13510935 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258311.1
ACTCTGTTAAAAACACCAGAAGAAGAGCGAGCGCGTCCTCTTAAGGGCGCCaaactctaaaaaaaatgtacatttcatatctataatttttaagtttaacGCATACAAAACgttcttgttcttgttttgtgttcGTTATTAAGCACCTGACTGAGCGTTTGGCCATCTCTGTGGaTGCTGACGAAGCAGAACCATGCCTCTGTCCACTCAGTCCCAAGCAGACATCGACCAGTACGTTCTGATAGCCAGTTTGGATAATGCAAGGAATCTGTCCAACATCCTGAAAGCCATCTCTTTCAGGGACCATGCAATCTTCAATGCAACCCAGAATGGCTTGAAAGTCACTGTTGAGGACTCCAAATGCCTTCAAGCCAATGCATTCATTCAGGCAGACATCTTTCAAGAATACATTATCAAAGAAGATACAGTTGGATTTCAGATTAATTTGACCGTTCTTCTGGACTGCCTCACTATCTTTGGGGGAAGCCCAGTCCCAGGTGTGTGCACCGCCTTGAGATTGTGCTACAATGGCTATGGATATCCGCTGACCTTGTTTTTGGAGGAAGGTGGTGTGGTCACCGTATGTAAGATTAATACACAGGAACCAGAAGAGCCCATAGACTTTGACTTCTGCAGCACAAATGTAACCAACAAAGTGATTCTGCAGTCTGACAGTCTTAAAGAGGCTTTCTCTGAGCTTGACATGACCAGTGAGGTTCTGCAGATtactatgtcaccaagccatcCTTTCTTCAGATTATCCACATTCGGGAACTCTGGAAACGCTCATTATGATTATCCCAAAGACTCAGACATGATGGAGCTCTTCCAGTGCACTAAAATCCAGACCAACAGGTATAAGATGTCCCTGTTGAAACCCTCCACAAAGGCCTTGGCTCTGTCCTGTAAAGTCTCAGTGAGAACTGATAGCCGTGGCTTCCTCTCTCTACAGTATCTTGTGAGGAATGACGACGGTCAGATTTGTTTTGTGGAGTATTATTGCTGCCCGGATGAAGAAGTAGAGGAAGAATAGACTTGAAAGGACAGTTCTTTTTGTTATGTTTGACATTTAGTGCGCACCGACCACTTGGACTctcatttatatgaatatttcataaaccacaaaaaaacataccaaTACTTTATTAGAAGTTTAAAAGGGTTATAAATGGGCCgggaaaaaaggtttttgtatTGAATTTGAGACAATACTCTGTGTGTTCGGCAGGGGGCGGCAGAGAAATACTAATTAGGCTATGACTTCTAAAACTAGGAGGCCGATTTTGGTTTAGTATGTTTAATTGGTATAAAATAGTTTAGTTTAAGccttcacgcacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatata

Function

symbol description
rad1 Predicted to enable 3'-5' exonuclease activity. Predicted to be involved in DNA damage checkpoint signaling and DNA repair. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of checkpoint clamp complex. Orthologous to human RAD1 (RAD1 checkpoint DNA exonuclease).

NR:

description
cell cycle checkpoint protein RAD1

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0000738 DNA catabolic process, exonucleolytic biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0008853 exodeoxyribonuclease III activity molecular_function

KEGG:

id description
K02830 HRAD1, RAD17; cell cycle checkpoint protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258311.1 True 1404 mRNA 0.41 6 13508176 13510935

Neighbor

gene id symbol gene type direction distance location
bbc3 LOC107743728 coding downstream 7145 13491553 ~ 13501031 (-)
zc3h4 zc3h4,LOC107585556,LOC107683834,LOC107743691,LOC107718283,LOC107601737,LOC107690443 coding downstream 27611 13469578 ~ 13480565 (-)
zgc:154093 LOC107743693,LOC107585559,LOC107718281,LOC107683833,LOC107690442,LOC107690441,LOC107601736 coding downstream 44814 13461640 ~ 13463362 (-)
ckmb ckmb,ckm,LOC107718278,LOC107690449,LOC107601735,LOC107585550,LOC107743697 coding downstream 68363 13436675 ~ 13439813 (-)
si:dkey-182i3.11 LOC107683826,LOC107743701 coding downstream 109229 13395061 ~ 13398947 (-)
tmem97 tmem97,LOC107585564,LOC107743752,LOC107690436,LOC107718286 coding upstream 2433 13513368 ~ 13514692 (-)
si:ch211-167j9.5 si:ch211-167j9.5,LOC107683836,LOC107601741,LOC107585561,LOC107718298,LOC107690476,LOC107734097 coding upstream 3894 13514829 ~ 13521530 (-)
usp32 usp32,LOC107585566,LOC107683840,LOC107690434,LOC107601698 coding upstream 10758 13521693 ~ 13560911 (-)
appbp2 appbp2 coding upstream 54168 13565103 ~ 13574765 (-)
LOC122359517 pipox,LOC107664955,LOC107585605 coding upstream 167550 13678485 ~ 13692629 (-)
G106442 NA non-coding downstream 562803 12945087 ~ 12945373 (-)
G106211 LOC107709112 non-coding downstream 667779 12838764 ~ 12840397 (-)
G106184 NA non-coding downstream 767102 12738051 ~ 12741074 (-)
G106137 LOC107657248,LOC107601702,LOC107709130,LOC107586283 non-coding downstream 835728 12672187 ~ 12672448 (-)
G106099 NA non-coding downstream 909603 12598286 ~ 12598573 (-)
G106525 NA non-coding upstream 95249 13606184 ~ 13606897 (-)
G106541 NA non-coding upstream 156636 13667571 ~ 13669379 (-)
G106548 NA non-coding upstream 242387 13753322 ~ 13756160 (-)
G106561 NA non-coding upstream 274243 13785178 ~ 13798248 (-)
G106572 LOC107664934,LOC107743664,LOC107585584,LOC103047044,LOC107744786,LOC107592620,LOC107690414 non-coding upstream 306453 13817388 ~ 13817880 (-)
ercc2 ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444 other downstream 47073 13454482 ~ 13461103 (-)
LOC122359155 LOC107662800,LOC107729090,LOC107586245,LOC107586286 other downstream 1218124 12280291 ~ 12290052 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other downstream 1474582 12030648 ~ 12033594 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other downstream 1652281 11842766 ~ 11855895 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other downstream 2150623 11353646 ~ 11357553 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other upstream 233620 13744555 ~ 13751057 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other upstream 367650 13878585 ~ 13881694 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other upstream 372985 13883920 ~ 13905494 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other upstream 397871 13908806 ~ 13925727 (-)
mmp20a NA other upstream 492806 14003741 ~ 14009286 (-)

Expression


Co-expression Network