bbc3 (LOC107743728)


Basic Information

Item Value
gene id bbc3
gene name LOC107743728
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13491553 ~ 13501031 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259746.1
CGAGCACTTCGCGGGAGTGAAAGCAACTTGCTGTCATCAGAAACCTACAGCTTCATCTTCACGAGCGCACCTAACTGCCGACCTGACAAAACCGACGCAGCCTTTCCTTCCTCCTGCTGCGGAATAACATGAGCGGACGTCTGACGAGGTGTTTTTAAAGCACGACACGCATCCGGTGTCAAGAGCGTCGCAAACCTGGAATAACATCTGAACGTCGCCGACTTCCAACCCGTTTTAAAGGCAGTATCTGGTATGGCCCGTCCAGAGATGGAAAGAAGGGCGGGTGATCGCAGCCCCGGAGCTCCAAATGGAGGATGTAGGATGGAGGTGCTGCGGCAGGACGCCTGGCCCTGCCACCGGCACCGAACCATCGCTACACAAACCAGCACTGTCTTGCCACCGCTAACCCAAGTCCCCACACAAGATGCCTTCAGCTCGGACAGCGTCCCGCAGCAGGACAATCCACTCAGGGATAACACAGgtgCAGAACAGGAACTCTCCAGCTCGAGAGAAAGGCAGCTTCCCCTGCCCGATCTGCTCCCAGACAGCCACAGCTCGTCCGAAGACTCGACGTCCAGCAGCTCCACGGCCGAGGACGATCCCAGGCTGGAGGAGGAGGCGGTAGAGAGGGTGGCCCTACAGCTGAGGACCATCGGAGACCAAATGAACGCCGTTTTCCTCCAGAGGAATGCCGTCCCACGCTGGCAGAACTGGAGAGGCCTGTACCACGGGCTCTTTGCATTCGTCGCCGACACCATCAATGCCCTTTACCAGCACGGCCTCAGATAAACAGACGGGTTACGTCACAGGAAGAGTGCGGGCGCTCTCCTGCCGACCACTTAAAGACTCCGGGACTTTTCTGCAGGATCAGATGTCGtgtttatggttttttttttttgtacatcttTTCCCATGGATTCTCATGTAGCATTAGTGACTGAAGCGTGTGTCCCGATATAGACGTCAGTGGGAGCATGTGGCTCTCGGTGCATTTGCATCAAACTCTTTTGCATCTTTAACTGCAATGCTGGGAAGTTTCATCAATCCGGGCTGCTCTCAAGCAAACCAATTGATTAGATCTGCGTAGCGCCTCGGGCCCAGAAGTGCTGTGCCGTGTCGTGGGTTCTCCTCTCAGCTGCCTTACAGGAGCAATAACTGCGCTGCACTATCAGTCGCCACTGACCCGCACACCATTAATGGAAAATGGGTGATAATCGAGATAATGGTATGCTCACGCACTATACTAATGGAGCACAGTTGGATCGTGCCTTGCTAGCGCTGATTTTCAGCTCTTTGTGTACTAAAGCCATCAGGGACAATCACTGGATGGTGTGTGGGTCAAGCGAACCTGTTGCCCCCATCTGAATCTATACTTCGGGACACAAATTTGCCACTTAATTCAAAGATTGGTCTTCCTCCAATGGAGGTACAGGAGTGAGGCTGGAAGCCTTGTGGGAAAGCCAGACCACTAGTTATTGAAATGGCTGGAGAGCAGTGTTAATATTTGTATCAATTAcaagtgtacatatttttttgagGAAGAAAGGACAGGATGGAATAAAATTGGAGGTTTGTTTTTTATGTGGTTtgtatattttgatgaaatgacCTTAAAGTACTTAACATTAAGTTCCTCTTTTTCAGtttctgtttattgtttttgctcttCGAATAGTTTTTTTGGACCAGCACTGgaaagcagttgttttaaaatcCAGTGGATTTCTGcttatttgcaatttatttgattagatttaaatgtaaaaaaaaaaaaaaatccccataAAAATGTACCTTGCGCATAGAATTCTCAAGTAAATATTTGAGAAGCACAAgctaatttattttgtatgtccaTCTTGGTTATTTTGATGATTGTTATAGACAAAAATGTTCGGCGATGAGCAAGTGGATTGAATAAGCATGGAGATATTCATTAGTGTTGTGTTTTACGGACCAAATATCTCTGTATCTTATTTGTCAACGTTCCCCTTTAATTTGTTACATAAAtccattcatatttttttttctgctctaaTTTATTTGTCTACATTAAGGACTAAACTGAGCCAAAATTCCATGATACTTGAACAGACGTGTTCTCTATGAATCAACGTGTCAGATCCAGGTCTTTCTGGGATTTTTACAGATACATAACACTGTTAGGGGTTTCAAGCACTTCCTTTAGaaaccacatttaaaaaaactgtggcAAGTCAGTGGGAAAACTCTTTAAACCACTCACATTTCTGCTTGCTTTGGCTTTGTAATATCGGTACAGAATTCTCATTGCATATTGTGGAGCAGAGATGTCTTTCCTGTGGCTGCCTGTCTCATGACTTCCTGTAAAAGTTGTGTGGTCTCTTTCCTGTGGCCACCTTGTGACTTCTCATCGATACATGCGTTCTCCGATGCAGAAAGGCCTTATTTGTACTGTCAGATTTACACTAAACTCATGTCGCTCATTTTCTAGCTTTGTACTTTTGCCATTTGAAATTTTCTATGTAAAATTTCTATATgaattttgtattgtttttttttccttaccattttcaataaatatgacaatttcaacagtg

Function

NR:

description
PREDICTED: uncharacterized protein LOC107743728

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0070059 intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259746.1 True 2579 mRNA 0.45 4 13491553 13501031

Neighbor

gene id symbol gene type direction distance location
zc3h4 zc3h4,LOC107585556,LOC107683834,LOC107743691,LOC107718283,LOC107601737,LOC107690443 coding downstream 10988 13469578 ~ 13480565 (-)
zgc:154093 LOC107743693,LOC107585559,LOC107718281,LOC107683833,LOC107690442,LOC107690441,LOC107601736 coding downstream 28191 13461640 ~ 13463362 (-)
ckmb ckmb,ckm,LOC107718278,LOC107690449,LOC107601735,LOC107585550,LOC107743697 coding downstream 51740 13436675 ~ 13439813 (-)
si:dkey-182i3.11 LOC107683826,LOC107743701 coding downstream 92606 13395061 ~ 13398947 (-)
hmbsb hmbsb,LOC107683832,LOC107743703,LOC108427930,LOC107718294 coding downstream 111974 13374962 ~ 13379579 (-)
rad1 rad1,LOC107601739,LOC107585563,LOC107743754,LOC107690438,LOC107718285 coding upstream 7145 13508176 ~ 13510935 (-)
tmem97 tmem97,LOC107585564,LOC107743752,LOC107690436,LOC107718286 coding upstream 12337 13513368 ~ 13514692 (-)
si:ch211-167j9.5 si:ch211-167j9.5,LOC107683836,LOC107601741,LOC107585561,LOC107718298,LOC107690476,LOC107734097 coding upstream 13798 13514829 ~ 13521530 (-)
usp32 usp32,LOC107585566,LOC107683840,LOC107690434,LOC107601698 coding upstream 20662 13521693 ~ 13560911 (-)
appbp2 appbp2 coding upstream 64072 13565103 ~ 13574765 (-)
G106442 NA non-coding downstream 546180 12945087 ~ 12945373 (-)
G106211 LOC107709112 non-coding downstream 651156 12838764 ~ 12840397 (-)
G106184 NA non-coding downstream 750479 12738051 ~ 12741074 (-)
G106137 LOC107657248,LOC107601702,LOC107709130,LOC107586283 non-coding downstream 819105 12672187 ~ 12672448 (-)
G106099 NA non-coding downstream 892980 12598286 ~ 12598573 (-)
G106525 NA non-coding upstream 105153 13606184 ~ 13606897 (-)
G106541 NA non-coding upstream 166540 13667571 ~ 13669379 (-)
G106548 NA non-coding upstream 252291 13753322 ~ 13756160 (-)
G106561 NA non-coding upstream 284147 13785178 ~ 13798248 (-)
G106572 LOC107664934,LOC107743664,LOC107585584,LOC103047044,LOC107744786,LOC107592620,LOC107690414 non-coding upstream 316357 13817388 ~ 13817880 (-)
ercc2 ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444 other downstream 30450 13454482 ~ 13461103 (-)
LOC122359155 LOC107662800,LOC107729090,LOC107586245,LOC107586286 other downstream 1201501 12280291 ~ 12290052 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other downstream 1457959 12030648 ~ 12033594 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other downstream 1635658 11842766 ~ 11855895 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other downstream 2134000 11353646 ~ 11357553 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other upstream 243524 13744555 ~ 13751057 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other upstream 377554 13878585 ~ 13881694 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other upstream 382889 13883920 ~ 13905494 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other upstream 407775 13908806 ~ 13925727 (-)
mmp20a NA other upstream 502710 14003741 ~ 14009286 (-)

Expression


Co-expression Network