hmbsb (hmbsb,LOC107683832,LOC107743703,LOC108427930,LOC107718294)


Basic Information

Item Value
gene id hmbsb
gene name hmbsb,LOC107683832,LOC107743703,LOC108427930,LOC107718294
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13374962 ~ 13379579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259783.1
TATCTGCTGAAGCCAGGACACTGGGGCGTGTTAGTGCCTCCTTCATCAGTCTCTCCTGCTTCATATTCTCTATACATTGCTTTCTCTTCCTCTGAAGACTACAGCTAACTTTTACTACAATGGCAGATGGACCTTATAAATACATTAGGgaTGCTGATGGCAAAGTCAGCAGGGTGATACGCGTTGGCACCAGAAAAAGCCAGCTGGCTCGAATTCAGACTGACAGTGTTGTAGAGAAACTCAAGGAGTTACATCCTgatgttcattttgaaataGtggCTATGTCAACAACAGGAGATAAAATACTTGACACAGCTTTATCCAAAatTGGGGAAAAGAGTCTCTTCACAAAGGAACTGGAAAATGCTTTGGAAAAAAACGAGGTGGACCTGGTCGTTCACTCTTTGAAAGACTTGCCCACTGTTCTTCCTGTGGGCTTCACTATAGGATCTGTGCTGAAGCGAGAAAACCCCAATGATGCTGTTGTCCTGCACCCAAAACATAAAGGCAAAAGTCTGGACTCTCTAGCCAACAAGAGtgttGTAGGTACCAGTTCTCTTCGTCGGGCTGCACAGCTAAAGAAGAGATTTCCTCATCTGGAGTTTAAAGACATTAGAGGTAATCTCAACACTCGTCTGAAGAAATTGGATGAAAAAGAGGACTTTTCAGCCATCATTTTAGCGGCAGCTGGTCTTCGGAGAATGGGATGGGAGAATCGCATCAGCCAGATCCTTGGGCCTGATGACTGCATGTATGCTGTTGGACAGGGTGCTCTGGCAGTCGAGGTGAGAGCTCAAGACCAGGACATTTTGGAAATGGTGTCAGTATTAAATGACGCAGACACCATGCTGAGATGTATCGCAGAGAGAGCCTTCCTCAAACACCTGgAAGGGGGATGCAGCGTTCCAGTTGCTGTTTACACTGAAGTTAAGAATTCACAGCTGTACCTGACTGGAGCGGTGTACAGTCTCGACGGGTCGGACAGTCTGAAGGAGACCATGCAGACAAGCATCAGCTCTGACAATCAGGTCGAGGGGCAGGAGAGAGTTGACGAGAAGGTCCAGCGTGTGGGCATCACTGCTTTAAAGGTGTCAGAAGCAGCCCAGGATGCTGCAGTGAAGTTAGGAGTGGACCTTGGAAATCTGCTGCTCAGCAAAGGAGCCAAAGAGATACTGACTGTAGCCAGACAGCTAAATGATGCACGATAGCAGTCCTTATACGTAGCTGAAGACCAACCACCCCCTAGTAGaagcattttttataaatttcagTGTCAACAAGTGTTATTAAGATATTGGTGAgtttttcacagaaaatgtttctttgtattTACAGGAGTTTATTAAAGGTCATTATGCAGTTACTACTTAAAACAGACTTGCAGTATGATGCATATTAATTAAgccaaaataatgactttaat
>XM_043259784.1
ACTACGGAAGTCGCACTCAACCGGTAACAGTCGGGAATGACATTTCTCCCAATTTAGTATTTTGTCTTTTACAATCATGAATTAGAAATGACTTTAATTTCAACGAGATAAGCACCAAATATCCTGGATTGTCTTACAGAATGTCAGAAAAGAAAGACCTACAGgaTGCTGATGGCAAAGTCAGCAGGGTGATACGCGTTGGCACCAGAAAAAGCCAGCTGGCTCGAATTCAGACTGACAGTGTTGTAGAGAAACTCAAGGAGTTACATCCTgatgttcattttgaaataGtggCTATGTCAACAACAGGAGATAAAATACTTGACACAGCTTTATCCAAAatTGGGGAAAAGAGTCTCTTCACAAAGGAACTGGAAAATGCTTTGGAAAAAAACGAGGTGGACCTGGTCGTTCACTCTTTGAAAGACTTGCCCACTGTTCTTCCTGTGGGCTTCACTATAGGATCTGTGCTGAAGCGAGAAAACCCCAATGATGCTGTTGTCCTGCACCCAAAACATAAAGGCAAAAGTCTGGACTCTCTAGCCAACAAGAGtgttGTAGGTACCAGTTCTCTTCGTCGGGCTGCACAGCTAAAGAAGAGATTTCCTCATCTGGAGTTTAAAGACATTAGAGGTAATCTCAACACTCGTCTGAAGAAATTGGATGAAAAAGAGGACTTTTCAGCCATCATTTTAGCGGCAGCTGGTCTTCGGAGAATGGGATGGGAGAATCGCATCAGCCAGATCCTTGGGCCTGATGACTGCATGTATGCTGTTGGACAGGGTGCTCTGGCAGTCGAGGTGAGAGCTCAAGACCAGGACATTTTGGAAATGGTGTCAGTATTAAATGACGCAGACACCATGCTGAGATGTATCGCAGAGAGAGCCTTCCTCAAACACCTGgAAGGGGGATGCAGCGTTCCAGTTGCTGTTTACACTGAAGTTAAGAATTCACAGCTGTACCTGACTGGAGCGGTGTACAGTCTCGACGGGTCGGACAGTCTGAAGGAGACCATGCAGACAAGCATCAGCTCTGACAATCAGGTCGAGGGGCAGGAGAGAGTTGACGAGAAGGTCCAGCGTGTGGGCATCACTGCTTTAAAGGTGTCAGAAGCAGCCCAGGATGCTGCAGTGAAGTTAGGAGTGGACCTTGGAAATCTGCTGCTCAGCAAAGGAGCCAAAGAGATACTGACTGTAGCCAGACAGCTAAATGATGCACGATAGCAGTCCTTATACGTAGCTGAAGACCAACCACCCCCTAGTAGaagcattttttataaatttcagTGTCAACAAGTGTTATTAAGATATTGGTGAgtttttcacagaaaatgtttctttgtattTACAGGAGTTTATTAAAGGTCATTATGCAGTTACTACTTAAAACAGACTTGCAGTATGATGCATATTAATTAAgccaaaataatgactttaat

Function

symbol description
hmbsb Predicted to enable hydroxymethylbilane synthase activity. Predicted to be involved in heme biosynthetic process. Predicted to act upstream of or within peptidyl-pyrromethane cofactor linkage and porphyrin-containing compound biosynthetic process. Predicted to be active in cytoplasm. Is expressed in hematopoietic system; mesoderm; and post-vent region. Human ortholog(s) of this gene implicated in acute intermittent porphyria and sickle cell anemia. Orthologous to human HMBS (hydroxymethylbilane synthase).

NR:

description
PREDICTED: porphobilinogen deaminase-like isoform X2

GO:

id name namespace
GO:0018160 peptidyl-pyrromethane cofactor linkage biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
K01749 hemC, HMBS; hydroxymethylbilane synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259783.1 False 1423 mRNA 0.45 14 13374962 13379264
XM_043259784.1 True 1438 mRNA 0.44 14 13374962 13379579

Neighbor

gene id symbol gene type direction distance location
abcg4b abcg4b,LOC107585553,LOC107683844,LOC108439979,LOC103370335,LOC104937503 coding downstream 1516 13363504 ~ 13373446 (-)
nlrx1 nlrx1,LOC107690451,LOC107718274 coding downstream 12108 13354101 ~ 13362854 (-)
pdzd3a pdzd3,pdzd3a,LOC107718292,LOC107690470,LOC107601692 coding downstream 21000 13347060 ~ 13353962 (-)
ube4a ube4a,LOC107743704,LOC107718272,LOC107690452,LOC107683820 coding downstream 31959 13332487 ~ 13343003 (-)
kmt2a LOC107743706,LOC107683818,LOC107585544 coding downstream 43938 13300482 ~ 13331024 (-)
si:dkey-182i3.11 LOC107683826,LOC107743701 coding upstream 15482 13395061 ~ 13398947 (-)
ckmb ckmb,ckm,LOC107718278,LOC107690449,LOC107601735,LOC107585550,LOC107743697 coding upstream 57096 13436675 ~ 13439813 (-)
zgc:154093 LOC107743693,LOC107585559,LOC107718281,LOC107683833,LOC107690442,LOC107690441,LOC107601736 coding upstream 82061 13461640 ~ 13463362 (-)
zc3h4 zc3h4,LOC107585556,LOC107683834,LOC107743691,LOC107718283,LOC107601737,LOC107690443 coding upstream 89999 13469578 ~ 13480565 (-)
bbc3 LOC107743728 coding upstream 111974 13491553 ~ 13501031 (-)
G106442 NA non-coding downstream 429589 12945087 ~ 12945373 (-)
G106211 LOC107709112 non-coding downstream 534565 12838764 ~ 12840397 (-)
G106184 NA non-coding downstream 633888 12738051 ~ 12741074 (-)
G106137 LOC107657248,LOC107601702,LOC107709130,LOC107586283 non-coding downstream 702514 12672187 ~ 12672448 (-)
G106099 NA non-coding downstream 776389 12598286 ~ 12598573 (-)
G106525 NA non-coding upstream 226605 13606184 ~ 13606897 (-)
G106541 NA non-coding upstream 287992 13667571 ~ 13669379 (-)
G106548 NA non-coding upstream 373743 13753322 ~ 13756160 (-)
G106561 NA non-coding upstream 405599 13785178 ~ 13798248 (-)
G106572 LOC107664934,LOC107743664,LOC107585584,LOC103047044,LOC107744786,LOC107592620,LOC107690414 non-coding upstream 437809 13817388 ~ 13817880 (-)
LOC122359155 LOC107662800,LOC107729090,LOC107586245,LOC107586286 other downstream 1084910 12280291 ~ 12290052 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other downstream 1341368 12030648 ~ 12033594 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other downstream 1519067 11842766 ~ 11855895 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other downstream 2017409 11353646 ~ 11357553 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other downstream 2032846 11326512 ~ 11342116 (-)
ercc2 ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444 other upstream 74903 13454482 ~ 13461103 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other upstream 364976 13744555 ~ 13751057 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other upstream 499006 13878585 ~ 13881694 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other upstream 504341 13883920 ~ 13905494 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other upstream 529227 13908806 ~ 13925727 (-)

Expression


Co-expression Network