nlrx1 (nlrx1,LOC107690451,LOC107718274)


Basic Information

Item Value
gene id nlrx1
gene name nlrx1,LOC107690451,LOC107718274
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13354101 ~ 13362854 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259612.1
GTGTGGTGGGCGGTACTACGACTGATTTAGCAGGAAGACAGAGCGGTGCGCTCTCATCGTCCGGCCGTGGAATGGACGCTTTCCTCGGCGGTGATCCGAGAGCCAGGACGCTGGCGGGGACTTGGGAAAATCAATGAAGGACCGTACACTGAGCCTCTAGATTAGacctgTTAAACCTTTTAAGTCACTATGACAAAACATATCATCCTTTAGAGgttattttaaagtcaaaatgtGGCGATTTGGGAGGCCATCGGGAACAGAAGTGTTAAGATGGAGATACCAAGGTTCACCAAGAGACGTTTGCTGCAAACTTCACACCAGGTCTCTTAAGAAAGGCTTTACATTAAGCCTCCGAACAGATGGCATCTGTAGTAGCATAAATCGTCATTACTTCTCATTTCCAGCCCAGTCAGCAAGCTCTTACAGAAATACATGGAGAGAACTGAGAACATCTATGTGTTATTCCATCTCTGGATTCAATCCTAGGTTCTTTTGTACCCATGAACCTGTCACAGATCCCATTGAGATCCACAGACAGAAGCTGACATTATGGTTCAGTCACCTTCCTCAAGAAGAGAGGCAGTTCGGTGGCTACTTTTCTCCCGAAACTATGCATGTGCAGCCGCTTATCCTAGAGCGTCATCCGGATGAGGACAGAGGTCTTAGTCCCTTCAAGCAAAAGACAAGCATATCCACATGTCCCTCTCTCACTGTTGAGCAGCTCtttgatgctaaaaataatagaaacaaGATACGAGGGCTAAATGTTTTGCTGTATGGGGCTGTCGGCACAGGGAAAAGTACTGTCGTCCGTAAACTGGTGCTGGATTGGTGCGATGGATCCGTTTTGTCCCAGTTCAAACTTGTGTTGCCTTTCTCCTGTGAGGATCTTTCCCATTTATCCAAACCAACATCCCTTCGAGACCTCGTGGGCAGGAAATACATGCACCTTCGCAAGACATCTTATCTGAGTGGAGATCATGACAAGGCTAAGGATGTCCTCTTCATCTTCAATGGAATGGAGAAGATGAAGTTGGATTTTCGTATCGGCTCCACAGAGTTATGCAGTGATCCCAATGAGCCTCTCCCATCGGGAGCTGTTGTTGTTAATCTAATGAGGAAATACCTGCTTCCTGAGGCCAGCATTTTGGTTACAACCAGACTATCTGCCGTGGACAGAGTTcctaaaaaatacataaatcgtTATATACAAATCTGTGGCTTCAATGATCCTGAGCGCCAGAGAGCCTATTTCACCAGTAGGCTCTTGCAACAGAATGAAGACAAGCCGGACAAGGCAGCCGAGACGCTCATAGAGATGCTCTACCTCAATCTACAGCGGGAGAGTCAGTTAGCAACCGCCTGCTTCCTACCATCTTACTGCTGGCTCACATGTGCCACTcttcatttattgcattttactgATACAAAGTCACCAATTCGAACCCTCACTGGCATCTACACAAGCTTTATGAGGCTCAACTTTGGAGGAGAAGTGATAACTGTGGATGGAAACATCTCTTCACAAGAGCAACAGAACTCATTAATGCTCTATGTGGTCCGTACAGTTGGTAAACTGGCTTTTGATGGCATCACCAACAAGCGGACGTCGTTCTCCGCTGAAGAACTGGAGCAGTGGGTTGGCGGTAAGACCAAAACCGATGAAGAGCTCCAACAACTGGCAGTGTTTCGCACAGACGTGCTTGACTTCTTTCTGGTTCCTCGAGATTATCGTGGTACGGATCCCGAATCTGGTGGGAGACGCTATGTGTTTGCTGTTCCCGCCATGCAGGAATATCTAGCCGCACTTTATGTTGTTCTTGGCGAAAACAAAAGCGTCCTGGAGAAGTTGACTAAGGAGGTTTCTGAGGCTTTGGGACAAGCCAGTGAAGACATCACAAGCCTCCTGAGCATCCTCTCCAAAATTATACCTTTCCGAATCTTCGCCATTTTCAACTTGCTTAAGTTGTTCCCGAAACTCTTCGAGCGAGTCAGCAGCCACAGCAAAGGGCGGATCGCAAATACCATGGCGGCGGAAATGTTTCGTTCGGAGGACAGCTTCAATGAAGATGTTTTGGACCAGGTGGAACAAAGCCTTCTTGGAGTGCATGGTCCACAGCCACAGGAGGAAACCTACACAAGAGCGTTTGAACTCTACCCTATCTTCATGGGTGGACTTCTTCATTACGGGAACCGCCGGGTCTTAGACCAGCTGGGATGCAGCATCAAGAGTCACACGGTTTCTCAGATCACCCGTGCGCTGAGAAAACACCTGATCAAGGAGAGCCAGAAAAAGCAGCCTCCAGAGGAGCTCATGGACCTTCTGGTCCTGCTGTATGAGTTCCAGAACCCTCGACTCACAGCTGAAGTCCTTCAGTCCATCAAGACTATCAATCTGTCGACCGTGCGCATGACGCCACACAAGTGCTTTGTGCTGAGCATGGTCCTGAGCTGCACAAGCTCAAGCTTCCACCTGAACGAGCTCAACCTCTCGTCCTGCCACATCACTCCAGAGTTACTGCAGATGCTCTGGCCAGCCTTCCATCACACTAGCAACCTCAATCTCCAGTTTAACAGCCTGGGTCCTGAGTCCTGCATTCTGCTGCGAGATCTCCTGCTAGAGCCCAACTGTACTATTAAGTCGATACAGTTGTGTGACAACTACTTGATGGACACCGGCATCAGCCATCTACTGGAAGCTCTGTCTGGTAACCACTCTCTACAGCGGCTGAGTCTGATGCACACGGGCCTCGGGGACCAATCGGCACACCTGCTGGCCGAGAAACTGGGCCAGCATGAAATGCTACAGGAGCTGAATGTGGCCTTCAACAACATCGGAGACAGTGCAGCTCTCACGCTGGTCGATGCCTGTCGCGAACATCCCAGCATCCACACAGTACATCTGTACCTGAACCAGCTTACCGATGTGGGGAAGCAGTCTCTGTACGTGCGTGGCGGTCCTCGGGTCAAGGAGGGCAGGCGGGTGAAGGTCTTGGCATCTGTAACGGAGGGTTCAGACATCTCGGAGGACTGGCATCCTATTCTGAGCGTTATTGGAAAAAATTCTCTTTCGTGGGACAGAGGCCGTGTACGCGAGCAGCTGCTGGTCTTCCTGAAAGACCTGGAATGGGGTCGCAAACAGCACCAGAGTTTTTGGAAAAAGATGCACTTTCGACGAGTGGAGAGCGTTGTGAGGCAAATGCTGCGCTTACTGGAAAAGAGCAGCGATACGGGAACAGGGACCGGTACAAAATAAGGAAACTATCATAGAAGCTTAAGGGATTTGGGAAATTTGTTGCCATATTTCACTTCAGAAAGCCTTAATATTTCCCAATTAGATTTGAAAGGGATTTTCATCTACTCGCATATACGTATACTGATGAggtcattttgagaaaacactGTGACagattagttttgtttgtttgacaacttttgccattaaaaaaaaacatttgctatgCATATGTATTCAGGGAGAATTCAGGGGTTTTTGttatcataaataaatgtgtcatGCCATTTTGTTTATGGTTAAACTCTTTAAACAACATAGGAGTGTGAAATGCTGCCCTAGAAAAATGTACCCAAGACAAGACTTtagattagtgctgtcaaacgattaaacaAGAttagtcgcatccaaaataagttttagtttatataatatgtgtgagtactaataaagtataaagtatagtatacagtatatatttttataaatatattattaaatctatacatacaaaatatacacattGCACATGCATATTATGTaggcaaaaacttttattttggatttaatcGTTTGATAGCActactttaaatgcttttgcaaTCTTACAGTATCTTTTGCCttaatatttgattgaaaaaaatatttgaactaaCAAATTGTGTCTGAAATTTAAacgacaaaataaaatgaaaagtgctGAAACGTTCAAAACTGGTAAAAGGTCAAActgtatgaataaataagatgTTGGTTTCTA
>XM_043259613.1
TGTGTGGTGGGCGGTACTACGACTGATTTAGCAGGAAGACAGAGCGGTGCGCTCTCATCGTCCGGCCGTGGAATGGACGCTTTCCTCGGCGGTGATCCGAGAGCCAGGACGCTGGCGGGGACTTGGGAAAATCAATGAAGGACCGTACACTGAGCCTCTAGATTAGacctgTTAAACCTTTTAAGTCACTATGACAAAACATATCATCCTTTAGAGgttattttaaagtcaaaatgtGGCGATTTGGGAGGCCATCGGGAACAGAAGTGTTAAGATGGAGATACCAAGGTTCACCAAGAGACGTTTGCTGCAAACTTCACACCAGGTCTCTTAAGAAAGGCTTTACATTAAGCCTCCGAACAGATGGCATCTGTAGTAGCATAAATCGTCATTACTTCTCATTTCCAGCCCAGTCAGCAAGCTCTTACAGAAATACATGGAGAGAACTGAGAACATCTATGTGTTATTCCATCTCTGGATTCAATCCTAGGTTCTTTTGTACCCATGAACCTGTCACAGATCCCATTGAGATCCACAGACAGAAGCTGACATTATGGTTCAGTCACCTTCCTCAAGAAGAGAGGCAGTTCGGTGGCTACTTTTCTCCCGAAACTATGCATGTGCAGCCGCTTATCCTAGAGCGTCATCCGGATGAGGACAGAGGTCTTAGTCCCTTCAAGCAAAAGACAAGCATATCCACATGTCCCTCTCTCACTGTTGAGCAGCTCtttgatgctaaaaataatagaaacaaGATACGAGGGCTAAATGTTTTGCTGTATGGGGCTGTCGGCACAGGGAAAAGTACTGTCGTCCGTAAACTGGTGCTGGATTGGTGCGATGGATCCGTTTTGTCCCAGTTCAAACTTGTGTTGCCTTTCTCCTGTGAGGATCTTTCCCATTTATCCAAACCAACATCCCTTCGAGACCTCGTGGGCAGGAAATACATGCACCTTCGCAAGACATCTTATCTGAGTGGAGATCATGACAAGGCTAAGGATGTCCTCTTCATCTTCAATGGAATGGAGAAGATGAAGTTGGATTTTCGTATCGGCTCCACAGAGTTATGCAGTGATCCCAATGAGCCTCTCCCATCGGGAGCTGTTGTTGTTAATCTAATGAGGAAATACCTGCTTCCTGAGGCCAGCATTTTGGTTACAACCAGACTATCTGCCGTGGACAGAGTTcctaaaaaatacataaatcgtTATATACAAATCTGTGGCTTCAATGATCCTGAGCGCCAGAGAGCCTATTTCACCAGTAGGCTCTTGCAACAGAATGAAGACAAGCCGGACAAGGCAGCCGAGACGCTCATAGAGATGCTCTACCTCAATCTACAGCGGGAGAGTCAGTTAGCAACCGCCTGCTTCCTACCATCTTACTGCTGGCTCACATGTGCCACTcttcatttattgcattttactgATACAAAGTCACCAATTCGAACCCTCACTGGCATCTACACAAGCTTTATGAGGCTCAACTTTGGAGGAGAAGTGATAACTGTGGATGGAAACATCTCTTCACAAGAGCAACAGAACTCATTAATGCTCTATGTGGTCCGTACAGTTGGTAAACTGGCTTTTGATGGCATCACCAACAAGCGGACGTCGTTCTCCGCTGAAGAACTGGAGCAGTGGGTTGGCGGTAAGACCAAAACCGATGAAGAGCTCCAACAACTGGCAGTGTTTCGCACAGACGTGCTTGACTTCTTTCTGGTTCCTCGAGATTATCGTGGTACGGATCCCGAATCTGGTGGGAGACGCTATGTGTTTGCTGTTCCCGCCATGCAGGAATATCTAGCCGCACTTTATGTTGTTCTTGGCGAAAACAAAAGCGTCCTGGAGAAGTTGACTAAGGAGGTTTCTGAGGCTTTGGGACAAGCCAGTGAAGACATCACAAGCCTCCTGAGCATCCTCTCCAAAATTATACCTTTCCGAATCTTCGCCATTTTCAACTTGCTTAAGTTGTTCCCGAAACTCTTCGAGCGAGTCAGCAGCCACAGCAAAGGGCGGATCGCAAATACCATGGCGGCGGAAATGTTTCGTTCGGAGGACAGCTTCAATGAAGATGTTTTGGACCAGGTGGAACAAAGCCTTCTTGGAGTGCATGGTCCACAGCCACAGGAGGAAACCTACACAAGAGCGTTTGAACTCTACCCTATCTTCATGGGTGGACTTCTTCATTACGGGAACCGCCGGGTCTTAGACCAGCTGGGATGCAGCATCAAGAGTCACACGGTTTCTCAGATCACCCGTGCGCTGAGAAAACACCTGATCAAGGAGAGCCAGAAAAAGCAGCCTCCAGAGGAGCTCATGGACCTTCTGGTCCTGCTGTATGAGTTCCAGAACCCTCGACTCACAGCTGAAGTCCTTCAGTCCATCAAGACTATCAATCTGTCGACCGTGCGCATGACGCCACACAAGTGCTTTGTGCTGAGCATGGTCCTGAGCTGCACAAGCTCAAGCTTCCACCTGAACGAGCTCAACCTCTCGTCCTGCCACATCACTCCAGAGTTACTGCAGATGCTCTGGCCAGCCTTCCATCACACTAGCAACCTCAAGTTGTGTGACAACTACTTGATGGACACCGGCATCAGCCATCTACTGGAAGCTCTGTCTGGTAACCACTCTCTACAGCGGCTGAGTCTGATGCACACGGGCCTCGGGGACCAATCGGCACACCTGCTGGCCGAGAAACTGGGCCAGCATGAAATGCTACAGGAGCTGAATGTGGCCTTCAACAACATCGGAGACAGTGCAGCTCTCACGCTGGTCGATGCCTGTCGCGAACATCCCAGCATCCACACAGTACATCTGTACCTGAACCAGCTTACCGATGTGGGGAAGCAGTCTCTGTACGTGCGTGGCGGTCCTCGGGTCAAGGAGGGCAGGCGGGTGAAGGTCTTGGCATCTGTAACGGAGGGTTCAGACATCTCGGAGGACTGGCATCCTATTCTGAGCGTTATTGGAAAAAATTCTCTTTCGTGGGACAGAGGCCGTGTACGCGAGCAGCTGCTGGTCTTCCTGAAAGACCTGGAATGGGGTCGCAAACAGCACCAGAGTTTTTGGAAAAAGATGCACTTTCGACGAGTGGAGAGCGTTGTGAGGCAAATGCTGCGCTTACTGGAAAAGAGCAGCGATACGGGAACAGGGACCGGTACAAAATAAGGAAACTATCATAGAAGCTTAAGGGATTTGGGAAATTTGTTGCCATATTTCACTTCAGAAAGCCTTAATATTTCCCAATTAGATTTGAAAGGGATTTTCATCTACTCGCATATACGTATACTGATGAggtcattttgagaaaacactGTGACagattagttttgtttgtttgacaacttttgccattaaaaaaaaacatttgctatgCATATGTATTCAGGGAGAATTCAGGGGTTTTTGttatcataaataaatgtgtcatGCCATTTTGTTTATGGTTAAACTCTTTAAACAACATAGGAGTGTGAAATGCTGCCCTAGAAAAATGTACCCAAGACAAGACTTtagattagtgctgtcaaacgattaaacaAGAttagtcgcatccaaaataagttttagtttatataatatgtgtgagtactaataaagtataaagtatagtatacagtatatatttttataaatatattattaaatctatacatacaaaatatacacattGCACATGCATATTATGTaggcaaaaacttttattttggatttaatcGTTTGATAGCActactttaaatgcttttgcaaTCTTACAGTATCTTTTGCCttaatatttgattgaaaaaaatatttgaactaaCAAATTGTGTCTGAAATTTAAacgacaaaataaaatgaaaagtgctGAAACGTTCAAAACTGGTAAAAGGTCAAActgtatgaataaataagatgTTGGTTTCTA

Function

symbol description
nlrx1 Predicted to be involved in intracellular signal transduction and negative regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to be active in mitochondrion. Orthologous to human NLRX1 (NLR family member X1).

NR:

description
PREDICTED: NLR family member X1 isoform X2

GO: NA

KEGG:

id description
K12653 NLRX1; NLR family member X1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259612.1 True 3998 mRNA 0.45 9 13354101 13362853
XM_043259613.1 False 3912 mRNA 0.45 8 13354101 13362854

Neighbor

gene id symbol gene type direction distance location
pdzd3a pdzd3,pdzd3a,LOC107718292,LOC107690470,LOC107601692 coding downstream 139 13347060 ~ 13353962 (-)
ube4a ube4a,LOC107743704,LOC107718272,LOC107690452,LOC107683820 coding downstream 11098 13332487 ~ 13343003 (-)
kmt2a LOC107743706,LOC107683818,LOC107585544 coding downstream 23077 13300482 ~ 13331024 (-)
c1qtnf5 c1qtnf5,LOC107601727,LOC107690457,LOC107718301 coding downstream 55291 13294766 ~ 13298810 (-)
mcamb mcam,LOC107718268 coding downstream 71870 13254308 ~ 13282231 (-)
abcg4b abcg4b,LOC107585553,LOC107683844,LOC108439979,LOC103370335,LOC104937503 coding upstream 650 13363504 ~ 13373446 (-)
hmbsb hmbsb,LOC107683832,LOC107743703,LOC108427930,LOC107718294 coding upstream 12108 13374962 ~ 13379579 (-)
si:dkey-182i3.11 LOC107683826,LOC107743701 coding upstream 32207 13395061 ~ 13398947 (-)
ckmb ckmb,ckm,LOC107718278,LOC107690449,LOC107601735,LOC107585550,LOC107743697 coding upstream 73821 13436675 ~ 13439813 (-)
zgc:154093 LOC107743693,LOC107585559,LOC107718281,LOC107683833,LOC107690442,LOC107690441,LOC107601736 coding upstream 98786 13461640 ~ 13463362 (-)
G106442 NA non-coding downstream 408728 12945087 ~ 12945373 (-)
G106211 LOC107709112 non-coding downstream 513704 12838764 ~ 12840397 (-)
G106184 NA non-coding downstream 613027 12738051 ~ 12741074 (-)
G106137 LOC107657248,LOC107601702,LOC107709130,LOC107586283 non-coding downstream 681653 12672187 ~ 12672448 (-)
G106099 NA non-coding downstream 755528 12598286 ~ 12598573 (-)
G106525 NA non-coding upstream 243330 13606184 ~ 13606897 (-)
G106541 NA non-coding upstream 304717 13667571 ~ 13669379 (-)
G106548 NA non-coding upstream 390468 13753322 ~ 13756160 (-)
G106561 NA non-coding upstream 422324 13785178 ~ 13798248 (-)
G106572 LOC107664934,LOC107743664,LOC107585584,LOC103047044,LOC107744786,LOC107592620,LOC107690414 non-coding upstream 454534 13817388 ~ 13817880 (-)
LOC122359155 LOC107662800,LOC107729090,LOC107586245,LOC107586286 other downstream 1064049 12280291 ~ 12290052 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other downstream 1320507 12030648 ~ 12033594 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other downstream 1498206 11842766 ~ 11855895 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other downstream 1996548 11353646 ~ 11357553 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other downstream 2011985 11326512 ~ 11342116 (-)
ercc2 ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444 other upstream 91628 13454482 ~ 13461103 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other upstream 381701 13744555 ~ 13751057 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other upstream 515731 13878585 ~ 13881694 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other upstream 521066 13883920 ~ 13905494 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other upstream 545952 13908806 ~ 13925727 (-)

Expression


Co-expression Network