RNA id: TU157408


Basic Information

Item Value
RNA id TU157408
length 1780
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G106541
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13667571 ~ 13669379 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTActtcactgaaaaaaatctcTTTGATGCCACTAATGGTGCAGAAATAAtacactgcagctttaaaacGTGAGAAATGTTGAACATGCTGAAAtgattttttgtcttttgtgtcggctaataaaaaagtcattatgAAACAAGCATGTTGAAACAAGtctaaaacaaaatcacaatcatttatttacaatatattaaactgtaatgcaaaattattaCTTATCAAGTGgtcatttattcaataaagaaaataaacattagcTATTTTGAAAGCTAGAATGAATCatacagatatttatatatttttatattaatgtgtaCAGCCAGCAAACGTTATGCATCTTGTTGCCACTTGTTTTAATTCGCCGGAAACGctcatttttcatattaaaatcaatatcGACTGCATAGAAAAGAGGATAAAATGGCTGACCTTTGCAGAGGGTCTATAAAACCATGGAAAATACACAAGCGGTCTCCCTTTAAAAATCAAAGAGAAGCAATGACATCCTTTCATTGCTAGTTCATATGCTGTTGCTTTATATTTTGGCAGCTTTGCTGAATCCATCAATGCTAGATCATAAATACTACAATGAtagcagaaaaacaaaacagaaggcAACAATGAAAATCAGAGGGGTGTGTGTCCATACGGGTTCAAGTGAGTCTCAAAGTCATTAGGTAAGGCCAAAAATACTGATGAATCCAATGTGACGACATGCCGCAGGGAAGCTGGGATTTCACAGTATCGGTTCTGTCAAACGTCTTCATCTCGTGCTTCTGGTTGCATCACCTCAGCGCAAAAAGCAACTTTGAAGCGGTTTATCGGTGGAGTTGGATGATAAATTACCACAATGCCCCATATAGCCAAGATCATGGGCGTTCCCTTGGGAAAGCCGGACCTCTATGATagccaaacaaaaaaagcctgagaacaacaaaacaaccacaacaaataaaaaagtgtgtgtgaataaaCCGCTGAGCCTTATAATGTTTACTATGAGCAAGCACTTAGTCAATTCAGTCAAAACAGAATAAGACCGGTgtattacaggaaaaaaaaaaaaaggtctgatACCAGACTTGAACATCATTAATATGCTGCCTTCTTATATCCTTGACCTGATCGCTTTTTTCCTCTCCacattaaacatcaaaacaaaatgaaggcCGAGAGGAGAAATGGACTTCCTTTCTTcctctggcaaaaaaaaaaaagaatccttCACCATATGAAAGCGAAGATGGAGAGGAAGGTGGTCTTAAATGAATCCCACCTAGACTTAAGTCAAGAACGAAAAACTCATTTGCTCACATACCTAAAACtacactgctgttttttttgtttagtttttttttttttggtaaaacaatattttctttgcattttttcctcttgattttcttttcttttacatttagcaCAACAGAAAATTTTTGCGTTTACATAATGCCATGTGTCTTTGGCTCAGGCCTGACCATGCAAGAGGCTGTAGCGAGTCGCCTCGAGCAACATCCATTACTGAATCCTGACCGGAGTAAGAATGCAAGCATGGTGTTTGGTAAAGTCACTGCTTATTTagaaaggaagaggaagaacgTCAGAAGTAAAAGCACACAAAGTGGAAAGAGTCAACAGTGCTGTGATTCGTGATGCTGTACAAACCCTTTAAAGCTCTAAACACAAAGCACATGTGAAATCATAATACTAATAACAAGTTGAAAGAAATGAGGGGTATATCTTTGCCAGAGCGCGTCCCATCATGCTCCTCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157380 lncRNA downstream 60674 13606184 ~ 13606897 (-) True G106525
TU157252 lncRNA downstream 722198 12945087 ~ 12945373 (-) True G106442
TU156916 lncRNA downstream 827174 12838764 ~ 12840397 (-) True G106211
TU156875 lncRNA downstream 926497 12738051 ~ 12741074 (-) True G106184
TU156805 lncRNA downstream 995123 12672187 ~ 12672448 (-) True G106137
TU157430 lncRNA upstream 83943 13753322 ~ 13756160 (-) True G106548
TU157448 lncRNA upstream 115799 13785178 ~ 13798248 (-) True G106561
TU157459 lncRNA upstream 148009 13817388 ~ 13817880 (-) True G106572
TU157480 lncRNA upstream 302671 13972050 ~ 13976201 (-) True G106588
TU157497 lncRNA upstream 336672 14006051 ~ 14006319 (-) False mmp20a
XM_043259116.1 mRNA downstream 92806 13565103 ~ 13574765 (-) True appbp2
XM_043259113.1 mRNA downstream 106660 13521693 ~ 13560911 (-) False usp32
XM_043259847.1 mRNA upstream 9106 13678485 ~ 13692629 (-) True LOC122359517
XM_043258354.1 mRNA upstream 46206 13715585 ~ 13741851 (-) True LOC122358517
XM_043258356.1 mRNA upstream 46206 13715585 ~ 13731684 (-) False LOC122358517
XM_043258355.1 mRNA upstream 46206 13715585 ~ 13730888 (-) False LOC122358517
XM_043259455.1 mRNA upstream 75176 13744555 ~ 13751057 (-) True LOC122359192
XR_006252707.1 other downstream 206468 13455981 ~ 13461103 (-) False ercc2
TU156053 other downstream 2161394 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 2310023 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 2335673 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 2363009 11303421 ~ 11304562 (-) False LOC122358622
TU157426 other upstream 77657 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 209206 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 214541 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 250690 13920069 ~ 13925707 (-) False cluha
TU157568 other upstream 628965 14298344 ~ 14322397 (-) False LOC122359058

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU32416 True 1990 lncRNA 0.41 2 NC_053113.1 45493348 ~ 45533453 (+)
striped catfish (Pangasianodon hypophthalmus) TU192507 True 1281 lncRNA 0.42 4 NC_047604.1 9843776 ~ 9850329 (-)
bowfin (Amia calva) TU192507 True 3579 lncRNA 0.40 2 CM030142.1 3989919 ~ 3993521 (-)