RNA id: TU192507


Basic Information

Item Value
RNA id TU192507
length 1281
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G162548
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 9843776 ~ 9850329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGTAAtgctttaattcatttttattcattcccaaaacagaaaatattactTGTCCATATAATTATACAGGGAATTAAGATCACATCTTCAGACTTTTCAGTATATTTGGCCTGACAGCGAGTGTCTAGGCACTCTTAAACTTCACATTATAAGAGACATAGTAGCCGTTGTTGAACATGTAGAGTTTCTGATCTCTAGGATTATAGTCCAAGTTGACATAGAAATCCTGGAACTTTTCAAACTGAACGCTAACATAGCTATCCTGTCTCGTGCGTGTGTTGTAAGTGTAAAAGATCTCTTCTGTCTGGGCGTCTATAGATCGTGTAGCGTAAAGAACACCACATATCATGAAGGCATTCGTGACAGATTGTTTGAATATGTTGGTTTCCCAAACCTCTGTCAGTGCAAATGCTGCCTCATCTATCTTGCCCAGCACCAGTTTACCCTTCGCTTCCTCTGTAGCGTACGTCACCCACAATCCATTCTCATCGGCCGCAAAGTCTAAGTTCTGATTGTCAGAATATTGGTAGGAGAATCTGCTACTGGCGCTTGGCACCACTCTGTACCCTGCGGTCTGACTGGTCATGTTGTATTTACCCATGCTGAAAGGTTCTCTGAACTGATAGTACAGGGTGTTACCACGCACAATGTAGTTATTACCTAGACCTCTCCAGTCACGACTGGAGTAAAGATCATGGGTTTTCATTGGCTGTCTCATGATTAACCTGTAATAGTCTGCATAAACATTAATTTGGCTAACCAGAGTATTAGAAGAACCTGAGTACCAGTACATATTTTCATAGCCGGGCAATGGGTTTGAATCTTTGCCCCATCCACCATATCTATGACCTGCATTCAGATGTGCGTTCAGGTGACTAATCATTGGTTTACTGAGTCTTGATATGAATCCATGGTCACAACCGATGTTGGGATTAAAAATCTCATTGTGGCGTCTCTCGCATTCCTCCAGTTTCTGCTGAAGCTTGATGTACTCTCTGCGTGTCAACAGTACCAGGTTCTTGTCATAGGTAGTCTCCAGTTCAGTCAGGATAACAATCATGGCAATGATCTGTTGCGAATGCTGACAAGCACTGTAGAAGAAATCTCAATGGATGCCTGAAGCTCCACAATCAGAGCTTCTATCTGCTTGATCTGAATCTTCACCTCCTGTATCTGGACCTCAGTGTAAGAGTCAGGGTCATTCTCCATGATCCCAATCAGCACTGTGAGGTTCATAATCTTCTCCATGTAAATCGTAAGCTTGATCTCAAACATCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192503 lncRNA downstream 19027 9824614 ~ 9824749 (-) True G162545
TU192470 lncRNA downstream 222091 9621382 ~ 9621685 (-) True G162514
XR_004578962.1 lncRNA downstream 255474 9586707 ~ 9588302 (-) True LOC117598277
TU192446 lncRNA downstream 294196 9549342 ~ 9549580 (-) True G162497
TU192174 lncRNA downstream 446804 9396255 ~ 9396972 (-) True G162279
TU192798 lncRNA upstream 403675 10254004 ~ 10254213 (-) True G162812
TU192806 lncRNA upstream 409123 10259452 ~ 10261141 (-) False acyp1
TU192812 lncRNA upstream 412114 10262443 ~ 10264117 (-) True G162818
XR_004578983.1 lncRNA upstream 441320 10291649 ~ 10293566 (-) False LOC117598311
XR_004578982.1 lncRNA upstream 441320 10291649 ~ 10293566 (-) True LOC117598311
XM_026934457.2 mRNA downstream 8748 9825172 ~ 9835028 (-) True angel1
XM_026934092.2 mRNA downstream 38124 9789744 ~ 9805652 (-) True arel1
XM_026934093.2 mRNA downstream 38124 9791306 ~ 9805652 (-) False arel1
XM_026934411.2 mRNA downstream 93402 9634066 ~ 9750374 (-) True LOC113538936
XM_026934412.2 mRNA downstream 215362 9619936 ~ 9628414 (-) True hs1bp3
XM_026934333.2 mRNA upstream 16748 9867077 ~ 9877765 (-) True dlst
XM_026934387.2 mRNA upstream 89335 9939664 ~ 9989008 (-) True esrrb
XM_026934391.2 mRNA upstream 90928 9941257 ~ 9993316 (-) False esrrb
XM_026934390.2 mRNA upstream 90928 9941257 ~ 9993316 (-) False esrrb
XM_026934394.2 mRNA upstream 90928 9941257 ~ 9992768 (-) False esrrb
trnas-aga_11 other downstream 215302 9628393 ~ 9628474 (-) True trnas-aga_11
XR_004578987.1 other downstream 327325 9491217 ~ 9516451 (-) False LOC113538771
LOC113545095 other downstream 778498 9060569 ~ 9065278 (-) True LOC113545095
LOC117598341 other downstream 783968 9057963 ~ 9059808 (-) True LOC117598341
TU190625 other downstream 2630392 7205468 ~ 7213384 (-) False zgc:103755
trnal-aag other upstream 357798 10208127 ~ 10208208 (-) True trnal-aag
trnal-aag_1 other upstream 359220 10209549 ~ 10209630 (-) True trnal-aag_1
TU192804 other upstream 409123 10259452 ~ 10261141 (-) False acyp1
TU192807 other upstream 409123 10259452 ~ 10261178 (-) False acyp1
TU192936 other upstream 553756 10404085 ~ 10415002 (-) False LOC113538721

Expression Profile