RNA id: XM_043259456.1


Basic Information

Item Value
RNA id XM_043259456.1
length 3817
RNA type mRNA
GC content 0.41
exon number 9
gene id tp53i13
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 14014962 ~ 14020759 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCGTAGATATGTGTGCGTATCGTCTGAAGACTAACACTACTCACATTATTGTGTATATGAAGTTTACTTGATCTCAGACTGCGCTGCCcgttataaaacaaaatacgtGTACGCGCGACATTCCGATCCGGGATACTGATGACTTTTAACTTGTTAAATGACAAACTTCAGATGTTTATATAACGAGCCAAGACTCTAAACATATCCGACGGTGTGTGTGGCTCGTTTGCGAATCGTGATGCGTTTCTCCATAACCGAACGAGCTCGTAACTTGTCGGTTCCTGAAAGTAAACAAACTTTCCGACGGTGAAGGCGCGGGTCCTCGAGCTCAGCATGGACCGTCGGACGCGACCCAACGGAGACGATTACGTTCATGAAGTCCAGCAGGGTGTCGTGGTTATGTGGCAGAGATTTAGTAAACCTTACCGTGTCGCGTGTATTTGACTGCGCTCGGATGAAGCCATGAGCCGTCAGGTGATCATCCTTTCTGGATTGATTTGTCTCTGTGTGACTCGGTGTTGCTCTTCCAGACTTGAACACTGCGACAACGGAAAGACAAATCTGATCACAGACCTACCAGGACCTGACGAGCTTGTGTGTCGTGAGCTTTGGCCAGAGCCACAGACAGTAAATCACgataataTGCCTGATGTTGAcacaaaacataatataaagGCTGCTGATTACATCTGTATGGACAAACCTCTTACATACAATGAGCGCATACCCACCCATGGTCCTTACCGGCCTGTTGAGGCAGAGAGTGGAGAGTATCTTTACTGCCCCCCTCAGCGCTGGCTGCACAACCTCAAAAACGGAGCGCTGGTGTTTCTGTATCACCCGTGTGTCTCGGCGGAAGCTCGCAGGAGTTTGGCGGGCTTGGCTCACTCGTGTCTGTCTCGTTACATCCTCACACCTCACCCCTGGCTCAGCCAACACAGACCTTTAGCAGTGGTCTCGTGGGGTCACTCACTAGAGATGTCTCGCATCACTCTGGGGGTTTGTGATTGGTTGTTTACCATTTCCTCCGATATTAATCAATCTAATACAAGCCAAAGAGCGAAGTACAATCTATATTTAACAAAGCCAGCACCTCTGGACAAAGCAGAGAACACCAGTCAAGAGATGTCCAAAGTGGAGAGATTAAAGTTCCTCAAAAACTGCTGCATGGAGACTCTCGGTCTCACTGAGCTACAGAGGACCAGAAGGAGAACCAGGAAGAGCAGGATGGTTGTCAAACAATCCCTGGAAGAAGTGGAACTGACGGATGACGTCAAACCAGAGGAATTTAACAACACAGAGAGTGCAAAACTGAACCGCAAAGACACGCTACCACAAAACCGCACAAAAGAGATGGCGTCCCTCTTAGTGCTAACTGTTACACAATCTCTCAGTTCTGCAAAGGACTCGAAGGAGCCTGGAGACAGCGCTAAAGACAAATCGAACGCAACTGAGAAGCAGTTTTCACCAAGTAATGTGACTGAAAGACCTAAATTCCAAAGTAACAGAAAAACACCTAAGAAAACTATAACAGGAGGTAAGAAGCATCGCATTAAGACTGACACAAAGGCTCAGAGGACGGGATCTGAATGCGGGGAGCTCGGACAGTGTGGAGTCTCAGACTCCTCAAAGTCTCCTCCTTTAGGAGGACCGCTGAGGGGCGAAAGGATGCCCATACAACGTACAGATGAGGCCGTGTGGGCAGCAGGCGCTTTGGGATTCCTCTTAGTGCTCCTCACTCTGTCTGTGCTCCATACACGACTCTATCGCCACTGGAGGGCTTCAACCAGTCTCTACTGGCATGACAATCAGCAAGACTACGAGAGTGTGGGTGACATCATCCGGCGGAGGCTTAGGATGGTTGGCCGAAGGAAAAGAAGGAGTGGCCAGAACAGGAGACAGGAATGTCCATTGTTGACTGATACCAGCAATGAGGAGAACTCTGATTAATGGACAGGATTGGGGAACACTAGAAATCTTACAAACTGTTGGAAAATCGCACAATAATCTTGTGGTGCTCATGAAGTAAATATGgaccttttttttataaaactaagGATAACTTTCCACATTGAAGACTTCAACGACAATTTGTCTCTTGTATTTCATATAGTGACAGTTAAGTGATAAGGGTTATTTAATTTCTACCATTTAGTTTTAACTTTTACACTTTGTGTATGTTGTGTGTTGCATTGTCTGTAGTTGTTATATCATACTGGTAAAGCAGCGATAATATGGAAGGAGTGACAAATCATATTTTTCACATTGTGTACAAAGTGTAATTTAGgattattaaaacagaaaaaaatgtagggTAGAGATTTTATTCTAATCATTGATTGCTCATTAGATTTCACTCAAAAGTGAATTTCCATTTCCATGCTGACTTGTGTAAAGGTGGAATGTTTGGTTCACACTACAGGCATTTGTTTCCTGCTGCTTAGGTATTATTTTTGATGGTAGGTTTCTAAAAAGCTGTGATAATTTACTCATCCTTACGttattctaaacctgtatgactctttttttttttctgtggaacacaaaagaagacatttttaagaatgttgcAAACTATGTTTTAGTGACGATGTATTAGATTCCAAAGAGACATTTCTCAAAAGCATACAGGGgtgagtttttagtttttaggttAATAGCCTCTTATGATaagtatgaatgaaaaaatgatgCATATGGTATCCTACTCTATAGCCCCGTCTGTTGGTGAGCATGACTGTGGTTCGTGTGTCACATGACCTGACACAAGGAGATGGCAGTAGAGAGCTCCCTGGTCAATAGTTTCAATTATGTAACTGCGCTGGAAGTTGTTGAGCAAATACTTTTTCATGTGTAGCATACTAATTGTATTGTTCAGAATCATACTAAAAGCAATAAAGACATTCATCTAGATTCTATTTGGGCCATAAActacatattttgtaataataaccTTAATTCTCAGAATAAATCCACTCGAAGTGAACATAGACTTTATATGAATACTGCCTGAAATCAAATTTAGTGGCCTTACACAAACGAAGCCGTTTTTCAATTCAaccacaaaatgttaaaatcttaaaattttcaaaaaagtgaTTATTCCAATTCTATTTGACACTCACAACTTGTCTTGCAAAACCTTGAATGTGCTCTTTACAACAGAAGAGGGACAAACTTGACTacgaaagaaaaacattatagCATTTAGTATTTATAGTACTTGTGTATTTGCACACATTACACAATTTTCACATTACTCCAGGTTGCAGTTATTTGTCACTAAAGGATTAAGACATTTTCATGTAGTCTTGCAAAATGTTGTTTATCCATGCAGACACTATGCAGAAGAGAAcgatatattaaaaacaaaaccatccTTTGATGACAAATGTTGTTGCCTAATATTGGGCCTACGTGAAAGAGCTATCTTGAGTGATACCGatcataaataatttcaaaatatgttttgcataAATCTTCATCCTGTGTTGTCCTCACTCCTCCATATATTAGATCTcctagcatttttttttttatcctaaaaCAATGCAATTACTGTTCAACAGAATTAACCATATAATTGTCTCAATGATAACCAGGGACGTCTTTTGCAAGTGTGAGCGGTTGTGAGTTGTGCAATTGAAGCCATTTGAAGGCAAAATAAAGAATGCAATGCAATCTGTGGATCAGTGGCTTTCGGCTATGTATTGTGAAATcataacagaaaacaagagaTGCTGTGGAAACATGAAGCGAGATGTTAAAGGTGTACATGTGCTATATGTTTGCTCATTAAAGCTTCCGATCCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157497 lncRNA downstream 8643 14006051 ~ 14006319 (-) False mmp20a
TU157480 lncRNA downstream 38761 13972050 ~ 13976201 (-) True G106588
TU157459 lncRNA downstream 197082 13817388 ~ 13817880 (-) True G106572
TU157448 lncRNA downstream 216714 13785178 ~ 13798248 (-) True G106561
TU157430 lncRNA downstream 258802 13753322 ~ 13756160 (-) True G106548
TU157542 lncRNA upstream 32665 14053424 ~ 14053535 (-) True G106631
TU157544 lncRNA upstream 38216 14058975 ~ 14059178 (-) True G106633
TU157545 lncRNA upstream 41813 14062572 ~ 14062837 (-) True G106634
TU157546 lncRNA upstream 45572 14066331 ~ 14066837 (-) True G106635
TU157550 lncRNA upstream 61051 14081810 ~ 14083998 (-) True G106637
XM_043259910.1 mRNA downstream 1895 14009424 ~ 14013067 (-) True mmp20b
XM_043259911.1 mRNA downstream 5676 14003741 ~ 14009286 (-) True mmp20a
XM_043259907.1 mRNA downstream 19648 13982867 ~ 13995314 (-) False hif1al
XM_043259909.1 mRNA downstream 24133 13982867 ~ 13990829 (-) True hif1al
XM_043258965.1 mRNA downstream 59346 13940355 ~ 13955616 (-) True tlcd2
XM_043258394.1 mRNA upstream 739 14021498 ~ 14041149 (-) False taok1a
XM_043258393.1 mRNA upstream 739 14021498 ~ 14041143 (-) True taok1a
XM_043258395.1 mRNA upstream 739 14021498 ~ 14041141 (-) False taok1a
XM_043259177.1 mRNA upstream 156781 14177540 ~ 14252042 (-) True LOC122359057
XM_043259178.1 mRNA upstream 277492 14298251 ~ 14322439 (-) True LOC122359058
TU157450 other downstream 89255 13920069 ~ 13925707 (-) False cluha
TU157458 other downstream 109468 13883920 ~ 13905494 (-) True G106571
TU157457 other downstream 133268 13878585 ~ 13881694 (-) True G106570
TU157426 other downstream 265753 13747036 ~ 13749209 (-) False LOC122359192
XR_006252707.1 other downstream 553859 13455981 ~ 13461103 (-) False ercc2
TU157568 other upstream 277585 14298344 ~ 14322397 (-) False LOC122359058
TU158145 other upstream 1755749 15776508 ~ 15782011 (-) True G107064
XR_006252641.1 other upstream 1886603 15907362 ~ 15910474 (-) False xaf1
XR_006252671.1 other upstream 2394348 16415107 ~ 16426389 (-) False LOC122359003
XR_006252653.1 other upstream 2530523 16551282 ~ 16762063 (-) False msi2b

Expression Profile