RNA id: XM_043259177.1


Basic Information

Item Value
RNA id XM_043259177.1
length 1866
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC122359057
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 14177540 ~ 14252042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCCAATCAGATTCTGATGAGATTCTCAAAAATCCAGAGCTCAATGAAGCCATTAAGGCTTTGCCAGCTAACTACAATTTTGAGGTCCACAAAACAATATGGAGGGTACGACAAGCCAAAGCCAAGAGAGTGGCCTTGCAGTTGCCCGAGGGTCTGCAGATGTTTGCCTGTGTGATCGCTGACATCATTGAAAGATTCACAGAGGCGGACACTCTGGTGATGGGAGATGTGACATATGGGGCCTGCTGCGTAGACGACTTCACTGCCCGGGCACTGGGAGCTGACTTCATGGTGCATTATGGACACAGTTGTCTCATCCCTATAGACTCAACAGAGGGCATCAAGATGCTGTACGTGTTTGTGGACATCCAGATTGACACTGCCCACTTCCTGGACACACTCAGGTTCAACTTTCCCCCTGGCCACTCGCTCGCCCTCGTCAGCACCATCCAGTTTGTGGCTGCTTTAcaggcagccagtgcagagTTGAAGCCAGGTTATGAGGTGTTGGTACCTCAGTGTCGACCACTTTCTCCTGGCGAGATCCTCGGATGCACGTCACCTCGTCTGGAGAAGCATGTCAATGCCATCATTTATCTCGGAGACGGAAGATTTCATTTGGAATCCATCATGATTGCCAACCCAGATATACCTGCATACAGGTATGACCCATACAGTAAAGTATTTTCTCGAGAGTATTATGACCATGAGGCAATGCGGGCCACCAGACTGCAGGCTATAGAGAGCGCCCGCTCAGCCCAGAGATGGGGCCTCATCCTCGGCACCCTTGGCCGTCAGGGCAACCCCAAAATCTTGGAGCACTTAGAGTCTCGGTTGGAGTCTTTGGGTCGTTCGTTCACACGTGTGCTCCTGTCTGAGATCTTCCCCGGCAAGCTGGAGCTTCTGGCAGACGTGGATGCGTGGGTGCAGATCGCTTGTCCTCGTCTCTCCATCGACTGGGGAACGGCTTTCTCCAAACCCTTGCTGTCTCCATACGAGGCAGCAGTAGCGCTGCAGCAGGTGGGATGGCAGGAGGTGTATCCTATGGATTTCTATTCCAATCAGAGCCTGGGGGCCTGGACTCCTAATTACCCAGACAACCAACCAAAAAGGCCTTCTCGCAAACCCATGCAGAAGGCGGGTTCAGATGCCGGTCAGCAGGTGAGGAGCTGTGGCCCTGAGAAGAGCGCCCCCTGCGGCTGCCAGCCGGAATAAACGCAGCCCTTTCAGCACGACCAACCACTGATCAATGCGGACATCTGCAGGAGACAAGCGAGCCAATCAGATCTCACTATTGACATCCCAGCCCAACACTTCACATCCCTCGTTATGACACGAGACGGCGAGAAACGGAAAAACTGAAGTGAGAaagaataagtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagaaatgcaaaaatgtgaggaagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttagtgcaCTGACATGTCACTGGTGTGTGTAAGACAGACATAATCCGTTGAAAAAGAAGCGCTGACCCTGAATGCACAATGTCTGGGTGGGTGGTTTTAGTTTAACGTAATCATCTTGTCCCTCACTTAGAAATGAGCTGCCAGCCACTTTGCATAAGTGACCTTCATCCTTTCAAAATTACAGCGGGAAATGAGAGCATGTTCAGAATTATTCTTCTGCGGAGGAAGATAATACTTATTCTGAATtccaattctgacttttttatttCCCATTATGCCGGGATGAGAGGTTCTCCAAGCGAAAGGAGCtctttttgaatgttttgtgcaGGGTGCGTTTTAGTTACtcccaaaataaaattacatgttTACAA

Function

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K07561 DPH1, dph2; 2-(3-amino-3-carboxypropyl)histidine synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157558 lncRNA downstream 17277 14115824 ~ 14160263 (-) True G106641
XR_006252717.1 lncRNA downstream 17281 14147489 ~ 14160259 (-) True LOC122359546
TU157561 lncRNA downstream 27430 14147973 ~ 14150110 (-) False LOC122359546
XR_006252614.1 lncRNA downstream 56601 14097779 ~ 14120939 (-) True LOC122358515
TU157554 lncRNA downstream 83307 14086749 ~ 14094233 (-) True G106638
XR_006252705.1 lncRNA upstream 210465 14462507 ~ 14490693 (-) True LOC122359476
TU157641 lncRNA upstream 285536 14537578 ~ 14547466 (-) True G106705
TU157643 lncRNA upstream 295788 14547830 ~ 14548903 (-) True G106707
TU157650 lncRNA upstream 300741 14552783 ~ 14553300 (-) True G106710
XR_006252657.1 lncRNA upstream 633144 14885186 ~ 14892343 (-) False LOC122358902
XM_043258394.1 mRNA downstream 136391 14021498 ~ 14041149 (-) False taok1a
XM_043258393.1 mRNA downstream 136397 14021498 ~ 14041143 (-) True taok1a
XM_043258395.1 mRNA downstream 136399 14021498 ~ 14041141 (-) False taok1a
XM_043259457.1 mRNA downstream 156781 14014962 ~ 14020759 (-) False tp53i13
XM_043259456.1 mRNA downstream 156781 14014962 ~ 14020759 (-) True tp53i13
XM_043259178.1 mRNA upstream 46209 14298251 ~ 14322439 (-) True LOC122359058
XM_043259644.1 mRNA upstream 241927 14493969 ~ 14515049 (-) True rpa1
XM_043259647.1 mRNA upstream 263656 14515698 ~ 14520262 (-) True serpinf2b
XM_043259646.1 mRNA upstream 263656 14515698 ~ 14519934 (-) False serpinf2b
XM_043259643.1 mRNA upstream 268478 14520520 ~ 14532746 (-) False wdr81
TU157450 other downstream 251833 13920069 ~ 13925707 (-) False cluha
TU157458 other downstream 272046 13883920 ~ 13905494 (-) True G106571
TU157457 other downstream 295846 13878585 ~ 13881694 (-) True G106570
TU157426 other downstream 428331 13747036 ~ 13749209 (-) False LOC122359192
XR_006252707.1 other downstream 716437 13455981 ~ 13461103 (-) False ercc2
TU157568 other upstream 46302 14298344 ~ 14322397 (-) False LOC122359058
TU158145 other upstream 1524466 15776508 ~ 15782011 (-) True G107064
XR_006252641.1 other upstream 1655320 15907362 ~ 15910474 (-) False xaf1
XR_006252671.1 other upstream 2163065 16415107 ~ 16426389 (-) False LOC122359003
XR_006252653.1 other upstream 2299240 16551282 ~ 16762063 (-) False msi2b

Expression Profile