RNA id: XM_043259644.1


Basic Information

Item Value
RNA id XM_043259644.1
length 2479
RNA type mRNA
GC content 0.46
exon number 17
gene id rpa1
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 14493969 ~ 14515049 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCTTACTTTCGCGCGTTTGTAGAGAGTTGGCGCGAGGAGACCGGAGGCTGCTGTTAGAAGAGACGGCTGTtggctattattattacaagAGTTAATCTTCGTTTTGCAgtattttgttgaaaatatgGCTGTTCGACTGTCAGAAGGGGCAATTGAGtccCTGACAAAAGGAATTGAAGTCAGCAACCCTGTTCTTCAGTGTGTGAACATTCGTAAGATTGATGGGGGTAGTGGACTGTCCCGTTTCCGTCTCATGATGAGTGACGGCCTACACACCATGTCCTCGTTCATGCTCTCCACGCAGCTCAATCCCATGGCTGAGCAGAACCAGTTGGCCTctaactgtgtgtgtatgctgaAGAGAAGCGTTACTAATGTTCTCAAAGATGGGCGACGTGTGGTAGTCATACTGGACATGGATGTGATCAAGTCTGCTGATCAAATGGCGGGAAAAATTGGAGACCCAACTCCTTACGTGGAGGGCCAGTCAAAGCCACAACAAAATGCAGCTCCGGCTCCAAATGTACGGGCATTACAGCCCCAGAATGGAAGCGATGGTTCAATGAACAGACCTTCTGCTCAGAGCTTCGGGAAAAAGCCCATGGCTGCCCCCAACACTCCTGGAGGCAGCTCTAAAGTCGTTCCTATTGCCAGCCTTAATCCATACCAGTCAAAATGGACTGTTAGAGCAAGAGTCACCAACAAGAGTGCCATCCGCACATGGAGTAACTCCAGAGGGGATGGGAAGCTTTTTTCCATGGAGCTTGTGGATGAAAGTgGGGAGATCAGAGCAACTGGATTTAATAACGAGGTGGACAAATTCTACTCCCTCATCGAGCAGGGAAAGGTCTACTACATCTCAAAAGGCACCTTGAAGATTGCCAACAAACAATTCTCTTCACTTAAGAATGACTATGAGATGACTCTAAATGGTGAGACAACCATCAGCCCTTGCGAGGACAGCCATGATGTCCCCATGGTGCAGTGCGACTTTGTTTCCATTGCTGACCTGGAATCCCGGGAGAAAGACACCATCATAGatgTGATTGGAGTGTGTAAAAACACAGAGGATGTGACGCGCATCATGACCAAGAACAGCCGTGAGGTTTCAAAGaggaacatacagctgatggaCATGTCCGGCAGAGTCATCCAGCTCACCATGTGGGGTAATGATGCAGAGACGTTTGATGGCAGTGGGCAGCCTATCTTGGCCATTAAGGGAGCAAGATTGTCTGACTTTGGTGGGCGTTCTCTTTCTACTCTCTACAGCAGCACGGTCATGATCAACCCTGACATTCCTGAGGCGTACAAACTACGGGGATGgTATGATAAGGAAGGACATGCTATGGATGGACAGTCAATGACAGAGTTAAGAGGacctggtggtggtggtggaaACACAAACTGGAAGACCCTAGCGGAAGTCAAGAATGAGCACTTAGGACATGGCGACAAAGCTGATTATTTCTCTTGCGTCGCCACCATAGTCTACATCCGTAAAGAGAACTGCTTGTATCAGGCCTGTCCCAGTAAAGACTGCAACAAGAAGGTGGTGGACCAGCAGAATGGCATGTACCGCTGTGAGAAATGTGACAAAGAATTCCCTGACTTCAAATACCGTCTCATGCTCTCGGCCAACGTTGCTGATTTTGGAGACAACCAATGGGTGACTTGCTTTCAGGACACTGCTGAGACCCTCCTGGGCCAAAATGCAGGTTATCTCGGCCAACTCAAGGACTCGAATGAACCTGCATTTGATGAGGTCTTTCAGCATGCAAACTTCAATACTTTTGTCTTCCGGAACAGAGTAAAGCTGGAGACCTACAATGATGAATCGCGCATTAAAGTGACAGTGGTGGATGCCAAGCCGGTGGACCACAGAGAATACAGCAAACGGCTGATCATCAACATAAGGAAGCAGGCTGCATAGAAGAACTGAGTTACATGAAACAAAACCCAACAAAGCCATTACATAGAACTTGAGTTACTTATGTTATTGCGCATACTAATTGTATAGCATCTCTGAAGtctatttttatgcttttctttagttttttttcccccctccattttgtatttcagtcagtattttataatttcacaaTAGCTTTTTCAAAAACTCCAAGATCAGATTAGCTTGTGCTGTTGTCCCCAGGGTTAACTGATTGGAAAGGGCCTGAAGTTCTTTAGAAATTGCTGACGTATTTTGTGAAGTGAAGATTGTAGAAGAGACAAATTGAGAAAGAAATGGACTTGGAGTTTGGAGAATTATAAATCAGTGCACATTCAGGGGTCTGCTGCTGTGATTTAGGTCGGCTAGAGAAATGTACAACGCTTGTCTCTGTAAAAATGCCTGGACCAAACCTGCAGAACATTGATAAACCTATCCACACTCATGCTTACCAGacacatactgtatttatagACATAACTGTATGTCTCATACAAATAATAAAGCTGTTTGTGTTCTGAA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K07466 RFA1, RPA1, rpa; replication factor A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252705.1 lncRNA downstream 3276 14462507 ~ 14490693 (-) True LOC122359476
TU157558 lncRNA downstream 333706 14115824 ~ 14160263 (-) True G106641
XR_006252717.1 lncRNA downstream 333710 14147489 ~ 14160259 (-) True LOC122359546
TU157561 lncRNA downstream 343859 14147973 ~ 14150110 (-) False LOC122359546
XR_006252614.1 lncRNA downstream 373030 14097779 ~ 14120939 (-) True LOC122358515
TU157641 lncRNA upstream 22529 14537578 ~ 14547466 (-) True G106705
TU157643 lncRNA upstream 32781 14547830 ~ 14548903 (-) True G106707
TU157650 lncRNA upstream 37734 14552783 ~ 14553300 (-) True G106710
XR_006252657.1 lncRNA upstream 370137 14885186 ~ 14892343 (-) False LOC122358902
TU157765 lncRNA upstream 370143 14885192 ~ 14893461 (-) True LOC122358902
XM_043259178.1 mRNA downstream 171530 14298251 ~ 14322439 (-) True LOC122359058
XM_043259177.1 mRNA downstream 241927 14177540 ~ 14252042 (-) True LOC122359057
XM_043258394.1 mRNA downstream 452820 14021498 ~ 14041149 (-) False taok1a
XM_043258393.1 mRNA downstream 452826 14021498 ~ 14041143 (-) True taok1a
XM_043258395.1 mRNA downstream 452828 14021498 ~ 14041141 (-) False taok1a
XM_043259647.1 mRNA upstream 649 14515698 ~ 14520262 (-) True serpinf2b
XM_043259646.1 mRNA upstream 649 14515698 ~ 14519934 (-) False serpinf2b
XM_043259643.1 mRNA upstream 5471 14520520 ~ 14532746 (-) False wdr81
XM_043259642.1 mRNA upstream 5471 14520520 ~ 14532746 (-) True wdr81
XM_043258997.1 mRNA upstream 38470 14553519 ~ 14560124 (-) False slc47a4
TU157568 other downstream 171572 14298344 ~ 14322397 (-) False LOC122359058
TU157450 other downstream 568262 13920069 ~ 13925707 (-) False cluha
TU157458 other downstream 588475 13883920 ~ 13905494 (-) True G106571
TU157457 other downstream 612275 13878585 ~ 13881694 (-) True G106570
TU157426 other downstream 744760 13747036 ~ 13749209 (-) False LOC122359192
TU158145 other upstream 1261459 15776508 ~ 15782011 (-) True G107064
XR_006252641.1 other upstream 1392313 15907362 ~ 15910474 (-) False xaf1
XR_006252671.1 other upstream 1900058 16415107 ~ 16426389 (-) False LOC122359003
XR_006252653.1 other upstream 2036233 16551282 ~ 16762063 (-) False msi2b
XR_006252673.1 other upstream 2272546 16787595 ~ 16834736 (-) False nf1a

Expression Profile