LOC122358902 (tbx2b,LOC107757046,LOC107589697,LOC107685069)


Basic Information

Item Value
gene id LOC122358902
gene name tbx2b,LOC107757046,LOC107589697,LOC107685069
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 14885186 ~ 14893461 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU157765
GCCAGATTTCGTAATAACCATTTCTGTTCCTAATTTGTGGAACTGGTCCCATAGATCCTTCGCTTCCAGTGTGACTTTTGGATCGTCTTCGACCTCTTCCTCTGGCTCCAGGCTCTTAAGACTGCGAAGATGAGCTGCCTGATGATGGTGACTCAGAGCCGGATGGAGCCCAGCCTCCGCGGCTCCGGCGAGGGTATGGTCCGGGATCGGCTTCGTGAGAGCCCCGGGAGGCAAGGTCAGAGCCGGAAAGAAGGAGGGTTGTGCGGCCGCTAGAAAAGCTGACATGGGAAAGTCGGTCGGCCGGTGAGCGTGGAAAGGGTGGTAAGCCATCGCAGTCCCTGTAAAAACTGGATCTCTCATCGGTGCATCCAACAATCGtagtggaaaaaatatattcagtggTGTTCTCTGGCAAAATCGGCGCGTATCCCGGCGATAAACTGTCTCACTACGAGAAGGAAAAGCGCAGCAAGGCAATTTCGGCAAAATGCGAATCGCGAAAAGGCGAGCAAAGACAGCGGCGAGGATCTTCCACTTTAACTCCCGTAGCTGCTAGTTTCCACGAAGTCCCCGTAATAATATCAGTCAAAGTGAGCGCAGCGACGCTTTGAAGGCGGATTTGGGGATTCCTGTTCTCCAACAGTTGCTCTCATAAAAAGATTACTCTTTCGATGCGGATGTCCATTCAAGCGCAGTCATTCTACGCAGACACGGAGTCGAAATGGTTAGATCTTGCCCTGTCCACTGTACAACTGTAACTATCTCACATGTCCTTCCTGCTCTGATCCCAGCACTAATGAACCAAGCCCCCTTGATTGCTGATTTTACGCTTTCTGGACCAATTGTGGGCCTCCATAGGCGTGGTTTTGACAGCTCCGGCCAGGCTCAAGGAGAGGGGGTGGACGAGAAGGTGTCGGAAGCATTAGCAGTAAGAAAACATGtcaacagaataaaatattaaccaaTGACAGAAAAGATCGGGAAATCCCACCCCCGTCTCCAAGCCAAGCAGCGGGTCAGCCCTCAGTGCTTAGCCGGTGGTGACTGCACCTCGGTCGGCTTGCGCTTTATAATTACGATGCCTCCTTGTTCGAGGAGCAAACTCATCCTCCGACACACACTGAAAGATAGGAATTAAGATTACTGACgtgtaaatgaacaaaaagcgCATATTGTTATGGTTAGCTAGCGCAAAACATGACACGCTTTTCCTTGgcagcacattttaaaacattacaaattgaGGACGACTATTCGTTATAGTCAATAAAAATATCAGGGGCACACCAAATGACGTTCATTCTTTTCCGCCGTGCGTGTCAAAAGCAAAGCGCGAGCATTTTGTTCATAAAATAGCGCCGCACGCCCATAGCCAAAGGACCTCGTCGCGCGTGTGAATTGAATAACTATTTCCGCGCTTCCTGCGTGTGTCGCGACAGACTTCATGTGAGGAACGGCAGCCAATAATGGGACATTGGTGCTTTAAATTGTGCCCCGGGTCATTCAAAGCGCGCAGCCACGCGCTATACCCACcgaagaaagaggaagagagttGACGGAGTCTAAAGACCAATGTAAAGATAATTTTGGCTGTCGCTCCGGTGATAAGGTGGCACTGGCGGTCTGGAGGGAGACGGAGAGGAACGAGGGCTGACCTTCCCAGACAGAGAGTGTGAGCTCTGCCACTGTCCTCCACACCGTCATGATGACTGCTTCACGCCGCCTTTGAGACACTGTGGGAAGCgattgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctttttaaagggAGAAGTGATGAGAAGATGCTGGTGATGatggaaaggggaaaaaaaacaatctgctTGTTTGACTCGGTACAATAAAGATCACTATGACGAC
>XR_006252657.1
CACTGAAAGATAGGAATTAAGATTACTGACgtgtaaatgaacaaaaagcgCATATTGTTATGGTTAGCTAGCGCAAAACATGACACGCTTTTCCTTGgcagcacattttaaaacattacaaattgaGGACGACTATTCGTTATAGTCAATAAAAATATCAGGGGCACACCAAATGACGTTCATTCTTTTCCGCCGTGCGTGTCAAAAGCAAAGCGCGAGCATTTTGTTCATAAAATAGCGCCGCACGCCCATAGCCAAAGGACCTCGTCGCGCGTGTGAATTGAATAACTATTTCCGCGCTTCCTGCGTGTGTCGCGACAGACTTCATGTGAGGAACGGCAGCCAATAATGGGACATTGGTGCTTTAAATTGTGCCCCGGGTCATTCAAAGCGCGCAGCCACGCGCTATACCCACcgaagaaagaggaagagagttGACGGAGTCTAAAGACCAATGTAAAGATAATTTTGGCTGTCGCTCCGGTGATAAGGTGGCACTGGCGGTCTGGAGGGAGACGGAGAGGAACGAGGGCTGACCTTCCCAGACAGAGAGTGTGAGCTCTGCCACTGTCCTCCACACCGTCATGATGACTGCTTCACGCCGCCTTTGAGACACTGTGGGAAGCgattgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctttttaaagggAGAAGTGATGAGAAGATGCTGGTGATGatggaaaggggaaaaaaaacaatctgctTGTTTGACTCGGTACAATAAAGATCACTATGACGACAAAAAA

Function

symbol description
tbx2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in BMP signaling pathway. Acts upstream of or within several processes, including animal organ development; cell migration involved in gastrulation; and photoreceptor cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including heart; immature eye; mesoderm; nervous system; and pronephros. Human ortholog(s) of this gene implicated in vertebral anomalies and variable endocrine and T-cell dysfunction. Orthologous to human TBX2 (T-box transcription factor 2).

NR:

description
T-box transcription factor TBX2b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157765 True 1892 lncRNA 0.50 2 14885192 14893461
XR_006252657.1 False 780 lncRNA 0.47 2 14885186 14892343

Neighbor

gene id symbol gene type direction distance location
ccdc9 LOC107548566,LOC107743647,LOC107664938,LOC107562957,LOC107685066,LOC107723874 coding downstream 200252 14672084 ~ 14684934 (-)
kiaa0753 kiaa0753,LOC107685065,LOC107548565,LOC107723875 coding downstream 220374 14646646 ~ 14664812 (-)
pitpnm3 pitpnm3,LOC107664939,LOC107685064,LOC108425893,LOC108277935 coding downstream 240196 14577887 ~ 14644990 (-)
LOC122358978 LOC107664896,LOC107743719,LOC107548544,LOC100537389 coding downstream 315064 14561357 ~ 14570122 (-)
slc47a4 si:dkey-175a17.4,LOC107743742,LOC107664908,LOC107548554,LOC107685178,LOC107562953,LOC107744808 coding downstream 324329 14553519 ~ 14560857 (-)
brip1 brip1,LOC107664950,LOC107743644,LOC107757032,LOC107685073 coding upstream 56493 14949954 ~ 14977034 (-)
lhx1a lhx1a,LOC107743643,LOC107669762,LOC107685180,LOC108277614,LOC107757026,LOC107589700 coding upstream 167317 15060778 ~ 15068970 (-)
dhrs13a.3 dhrs13a.3,LOC107756995,LOC107589701,LOC107669749,LOC107685074,LOC108427000 coding upstream 348563 15242024 ~ 15244405 (-)
cryba1a cryba1a,LOC107743738,LOC107669750,LOC107589703,LOC107548573,LOC107685075,LOC107757013,LOC108426912 coding upstream 352155 15245616 ~ 15253898 (-)
foxn1 LOC107669715,LOC107548559,LOC107743735,LOC107757374,LOC107685158,LOC107589739 coding upstream 372577 15266038 ~ 15278688 (-)
G106710 NA non-coding downstream 331886 14552783 ~ 14553300 (-)
G106707 NA non-coding downstream 336283 14547830 ~ 14548903 (-)
G106705 NA non-coding downstream 337720 14537578 ~ 14547466 (-)
LOC122359476 NA non-coding downstream 394493 14462507 ~ 14490693 (-)
G106641 NA non-coding downstream 724923 14115824 ~ 14160263 (-)
G106809 NA non-coding upstream 32258 14925719 ~ 14926001 (-)
G106960 NA non-coding upstream 178953 15072414 ~ 15079637 (-)
G106965 NA non-coding upstream 189747 15083208 ~ 15083415 (-)
G106966 NA non-coding upstream 190769 15084230 ~ 15084452 (-)
G106967 NA non-coding upstream 210504 15103965 ~ 15104289 (-)
LOC122359058 dph1,LOC107585615,LOC107664954,LOC107685060 other downstream 562747 14298251 ~ 14322439 (-)
mmp20a NA other downstream 875900 14003741 ~ 14009286 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other downstream 959459 13908806 ~ 13925727 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other downstream 979692 13883920 ~ 13905494 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other downstream 1003492 13878585 ~ 13881694 (-)
G107064 eml2,LOC107669753,LOC107548590,LOC107743713,LOC107685092 other upstream 883047 15776508 ~ 15782011 (-)
xaf1 LOC107714184,LOC107578343 other upstream 1013901 15907362 ~ 15910474 (-)
ly6d si:ch211-207n23.2,LOC107587620,LOC107683433,LOC107666183 other upstream 1061548 15955009 ~ 16063740 (-)
LOC122359003 LOC107714165,LOC107588126 other upstream 1519175 16412636 ~ 16426414 (-)
msi2b msi2b,msi2,LOC108425902,LOC107682662,LOC108435815,LOC108277875,LOC107587484,LOC105028669,LOC106603292 other upstream 1657730 16551191 ~ 16762064 (-)

Expression


Co-expression Network