lhx1a (lhx1a,LOC107743643,LOC107669762,LOC107685180,LOC108277614,LOC107757026,LOC107589700)


Basic Information

Item Value
gene id lhx1a
gene name lhx1a,LOC107743643,LOC107669762,LOC107685180,LOC108277614,LOC107757026,LOC107589700
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15060778 ~ 15068970 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259552.1
CAGAACACCGGAGGCTGTTCGGGGATCGTCATCGGTCCTGCAACGAGATGTCACGCGCATTCTGTTCACACTAGCATCTTTCACCTCTTCCGTCTTACCGAGGAAACAGCGCGCGTTACAGAGGGACACGCACTTTTCGAAGCGTTTGGCCGTTGCATCTTTCGGAaggacgtaaaaaaaaaaacagtggatACGTGGACATGGTAAAGTGCGCTCCAGTGTCTCTGGGCTCGCGTGCTAGTTCCGTCCGAGACCGGTTGCGTTAGACGCTTGTTTATGAAAGACTTTAATGCACGCCATCTCCGACGCTTCACCTCGTTGTTGACAACGGCGACGTGCTTTCTCCGCAACGATGTCCTCGTCTTTGTAGCCAACGAGCAGTTGGTGCTTTGAAAGATTTCTCTATGCTGGCTTCATTTATGCATCTCAAAATTTGGCGAGGAAGAGGATGAGAAATGATGACTGACAACTGAAGCGCTACCTCATGAGAAGACCCTCTTTCATCGTCCTGATTTTGGACCGCTACAGGTCCGTCCGAACACACAGAAGTGgtgaatataattaaaactttttttgatcTTTTCCTTTCGAACCCGTTCGCAAAGACTGACTTGGAGCGTCCTTCATCATTGCAACCCTTTGCCTTCTCTCTTTGggaagagagaaaagaggagcAGACTCTCAGGTTGTGGACACCACGGCAGTAACTGTGGGAGCGCATCCAAAGACAATGGTCCACTGTGCGGGCTGCGAGAGGCCTATATTGGACAGGTTTCTCCTTAATGTTCTGGACAGAGCATGGCACATCAAGTGCGTACAATGCTGCGAGTGCAAATGTAACCTAACAGAGAAATGCTTCTCTCGAGAAGGAAAACTGTATTGCAAAAACGACTTCTTTAGGCGCTTTGGAACAAAATGCGCGGGCTGTGCTCAGGGGATCTCGCCGAACGACTTGGTCCGGAGGGCACGGAGCAAAGTGTTTCATCTGAACTGCTTCACATGCATGATGTGTAACAAGCAGCTGTCCACGGGGGAGGAATTGTACATCATAGACGAAAATAAATTTGTCTGTAAAGACGATTATTTAAGCAACACGAACGGAAAAGACACCAATCTCCTTTCAGTCACAGCTTGCAGTGATCCTAGTTTATCGCCAGATTCGCAAGACCAGCTACAGGACGACGTCAAGGACGGGGAAATCGCGAACTTGTCGGACAAAGAAACGGGTAACAATGAAAACGACGACCAGAACCTCGGAGGCAAACGGAGAGGACCGCGTACCACCATTAAAGCAAAGCAACTGGAGACGCTGAAAGCGGCGTTCGCGGCGACCCCCAAACCAACAAGACACATCAGGGAGCAACTGGCGCAGGAAACGGGGCTCAACATGCGAGTTATTCAGGTATGGTTTCAGAACCGGCGGTCCAAAGAGCGGCGCATGAAACAGCTGAGCGCGCTCGGCGCGAGGAGGCACGCGTTCTTCCGGAGTCCGAGAAGAATGCGGACGCTCGTGGACAGACTCGAGCCTGGAGAATTAATTCCAAACGGCCCGTTTTCGTACTACGGAGATTATCAAAGCGAGTACTATGGTCCGGGAGGGAATTACGACTTTTTTCCCCAAGGCCCCCCATCTTCGCAGGCCCAGACTCCTGTAGATCTCCCTTTTGTTCCATCGTCAGGACCCACCGGTACCCCGCTAGGGGGCATGGACCATCCCATCCCAGGCCACCATCCGTCCAGTGAAGTACAGCGCTTTTCAGACATCATGTCTCACCACCCAGGAGACTCACCCAGCCCAGAGCCAGGGATACCTGGACCCCTGCACAGTATGTCCTCAGATGTTTTTGGACCTAGTCCCTCCTTTACATCCCTCTCCCTCAACGGCAGCGGATACAGCAACCACCTCTCCCACCCTCCGTCAGAAATGAACGAGGGCACGGTCTGGTAGCTTCTGTGAACGGACATTTCGGCAGAGAGAAATTACAATAAACAGAGGAAGGAGGGAGGGTGGGAACAGGGACACTGGCCGCACATTCTGGttcttatttttgtctttccCCCGTTTTGCCATGTCATAAATGCGGTGGGACAGCTCACAGAGAGagcagcagagggcagcatGGGCATTGACATTTACCTTCTTGAACTCGTTGTGTTGATGTTCcgtttccttctttctttctttacccTAAGTCCGAACTCAAGAAGAGAAAGAATTGATACTGTTGACCCCGGTCGCTGTATGAACTGAGCTATGAGGCCCAGAGTAGCAGCGTCCCTCCAGAAGCTCACCGCTTGTACCACCGGTTAAAAAACAGCGATTGCGACACATTAACAGCGTCAGCTACCGTCAAAGACTTGTCAGCTTTACAGAGAAACACCCAAGGCGGCTGATCTAACGCTAACCTGCAATGTTGACTCCAGGAAAGATCTAAGCCGTCagactaatttatttatttgaaaactcCTCAGACCTCCTTGCCTTTCAAGGCTCTGCCATACTGACACTTAAACAACCTTTTCGACACTAAATATGTTTCTGAAGGCCAGggagaaaaagctttttattttctcgTTCTGGACAtatcctgttttttttgttttgtttcgttttggcttttttttttacccaagaATTCCACCAAATCTGAAGAAGTTAGCCTTCAAAAGGCAAAGTGTTAAAATGTGTATGGACGGTGAACCCTTTATTTAATGGAAGAGAACTTGAAATGTTGATAAATGAAGTCTACcttctaaaattattttaacaaggGTCTGAAAGGGACATAGAACAGTCAActgtttacgtaatatatttaattcaggAGTTAAAAGTATCAACCATGATTTAGAACCTCTTGATCCAGAAAAAAATGTTCCAAGCAACCAACCAAacttttgtattgattttatttatattgtatgatGAAAACAAGTTTGCTGGGGTTGTGGTTCACTGTGCTAGTTTGtacaaaatgttgtttacaaaaaaacctgggaaaaaaaaaagaaaaaaaaaaaaatcaagtagacagttgccaaataaaaacatagcacaaatactgtaaaagtgCTTTGCACCATTATCTGCAGAACGTGTTGAAACAAAGTGtaagtgtttaaaaaacaatgagAAGTATTGACTTCTTAATTTTTTagtttgctgaaaaaaacattcataaattgTTAATATAACATACTTAGACctacaagttttatttttgtgtctttaAAGGAAAATCCAAACTATTGAAATTGATGGTCAAATGTGCAGCAAGCAGCTGCTACTTTCTTTAAATATCAAATTCTCATGGTATGTCTTTTATTGTTCTAATAAACCTAAGCTTACGTGACCTCCAGTGCATATTAGACCATTCACTGTATAAATACAACATGTTGAACAAATTTGtgagtttttaataaaattagaaaatatgaAA
>XM_043259553.1
ATGCAGAACACCGGAGGCTGTTCGGGGATCGTCATCGGTCCTGCAACGAGATGTCACGCGCATTCTGTTCACACTAGCATCTTTCACCTCTTCCGTCTTACCGAGGAAACAGCGCGCGTTACAGAGGGACACGCACTTTTCGAAGCGTTTGGCCGTTGCATCTTTCGGAaggacgtaaaaaaaaaaacagtggatACGTGGACATGGTAAAGTGCGCTCCAGTGTCTCTGGGCTCGCGTGCTAGTTCCGTCCGAGACCGGTTGCGTTAGACGCTTGTTTATGAAAGACTTTAATGCACGCCATCTCCGACGCTTCACCTCGTTGTTGACAACGGCGACGTGCTTTCTCCGCAACGATGTCCTCGTCTTTGTAGCCAACGAGCAGTTGGTGCTTTGAAAGATTTCTCTATGCTGGCTTCATTTATGCATCTCAAAATTTGGCGAGGAAGAGGATGAGAAATGATGACTGACAACTGAAGCGCTACCTCATGAGAAGACCCTCTTTCATCGTCCTGATTTTGGACCGCTACAGGTCCGTCCGAACACACAGAAGTGgtgaatataattaaaactttttttgatcTTTTCCTTTCGAACCCGTTCGCAAAGACTGACTTGGAGCGTCCTTCATCATTGCAACCCTTTGCCTTCTCTCTTTGggaagagagaaaagaggagcAGACTCTCAGGTTGTGGACACCACGGCAGTAACTGTGGGAGCGCATCCAAAGACAATGGTCCACTGTGCGGGCTGCGAGAGGCCTATATTGGACAGGTTTCTCCTTAATGTTCTGGACAGAGCATGGCACATCAAGTGCGTACAATGCTGCGAGTGCAAATGTAACCTAACAGAGAAATGCTTCTCTCGAGAAGGAAAACTGTATTGCAAAAACGACTTCTTTAGGCGCTTTGGAACAAAATGCGCGGGCTGTGCTCAGGGGATCTCGCCGAACGACTTGGTCCGGAGGGCACGGAGCAAAGTGTTTCATCTGAACTGCTTCACATGCATGATGTGTAACAAGCAGCTGTCCACGGGGGAGGAATTGTACATCATAGACGAAAATAAATTTGTCTGTAAAGACGATTATTTAAGCAACACGAACGGAAAAGACACCAATCTCCTTTCAGATTCGCAAGACCAGCTACAGGACGACGTCAAGGACGGGGAAATCGCGAACTTGTCGGACAAAGAAACGGGTAACAATGAAAACGACGACCAGAACCTCGGAGGCAAACGGAGAGGACCGCGTACCACCATTAAAGCAAAGCAACTGGAGACGCTGAAAGCGGCGTTCGCGGCGACCCCCAAACCAACAAGACACATCAGGGAGCAACTGGCGCAGGAAACGGGGCTCAACATGCGAGTTATTCAGGTATGGTTTCAGAACCGGCGGTCCAAAGAGCGGCGCATGAAACAGCTGAGCGCGCTCGGCGCGAGGAGGCACGCGTTCTTCCGGAGTCCGAGAAGAATGCGGACGCTCGTGGACAGACTCGAGCCTGGAGAATTAATTCCAAACGGCCCGTTTTCGTACTACGGAGATTATCAAAGCGAGTACTATGGTCCGGGAGGGAATTACGACTTTTTTCCCCAAGGCCCCCCATCTTCGCAGGCCCAGACTCCTGTAGATCTCCCTTTTGTTCCATCGTCAGGACCCACCGGTACCCCGCTAGGGGGCATGGACCATCCCATCCCAGGCCACCATCCGTCCAGTGAAGTACAGCGCTTTTCAGACATCATGTCTCACCACCCAGGAGACTCACCCAGCCCAGAGCCAGGGATACCTGGACCCCTGCACAGTATGTCCTCAGATGTTTTTGGACCTAGTCCCTCCTTTACATCCCTCTCCCTCAACGGCAGCGGATACAGCAACCACCTCTCCCACCCTCCGTCAGAAATGAACGAGGGCACGGTCTGGTAGCTTCTGTGAACGGACATTTCGGCAGAGAGAAATTACAATAAACAGAGGAAGGAGGGAGGGTGGGAACAGGGACACTGGCCGCACATTCTGGttcttatttttgtctttccCCCGTTTTGCCATGTCATAAATGCGGTGGGACAGCTCACAGAGAGagcagcagagggcagcatGGGCATTGACATTTACCTTCTTGAACTCGTTGTGTTGATGTTCcgtttccttctttctttctttacccTAAGTCCGAACTCAAGAAGAGAAAGAATTGATACTGTTGACCCCGGTCGCTGTATGAACTGAGCTATGAGGCCCAGAGTAGCAGCGTCCCTCCAGAAGCTCACCGCTTGTACCACCGGTTAAAAAACAGCGATTGCGACACATTAACAGCGTCAGCTACCGTCAAAGACTTGTCAGCTTTACAGAGAAACACCCAAGGCGGCTGATCTAACGCTAACCTGCAATGTTGACTCCAGGAAAGATCTAAGCCGTCagactaatttatttatttgaaaactcCTCAGACCTCCTTGCCTTTCAAGGCTCTGCCATACTGACACTTAAACAACCTTTTCGACACTAAATATGTTTCTGAAGGCCAGggagaaaaagctttttattttctcgTTCTGGACAtatcctgttttttttgttttgtttcgttttggcttttttttttacccaagaATTCCACCAAATCTGAAGAAGTTAGCCTTCAAAAGGCAAAGTGTTAAAATGTGTATGGACGGTGAACCCTTTATTTAATGGAAGAGAACTTGAAATGTTGATAAATGAAGTCTACcttctaaaattattttaacaaggGTCTGAAAGGGACATAGAACAGTCAActgtttacgtaatatatttaattcaggAGTTAAAAGTATCAACCATGATTTAGAACCTCTTGATCCAGAAAAAAATGTTCCAAGCAACCAACCAAacttttgtattgattttatttatattgtatgatGAAAACAAGTTTGCTGGGGTTGTGGTTCACTGTGCTAGTTTGtacaaaatgttgtttacaaaaaaacctgggaaaaaaaaaagaaaaaaaaaaaaatcaagtagacagttgccaaataaaaacatagcacaaatactgtaaaagtgCTTTGCACCATTATCTGCAGAACGTGTTGAAACAAAGTGtaagtgtttaaaaaacaatgagAAGTATTGACTTCTTAATTTTTTagtttgctgaaaaaaacattcataaattgTTAATATAACATACTTAGACctacaagttttatttttgtgtctttaAAGGAAAATCCAAACTATTGAAATTGATGGTCAAATGTGCAGCAAGCAGCTGCTACTTTCTTTAAATATCAAATTCTCATGGTATGTCTTTTATTGTTCTAATAAACCTAAGCTTACGTGACCTCCAGTGCATATTAGACCATTCACTGTATAAATACAACATGTTGAACAAATTTGtgagtttttaataaaattagaaaatatgaAA

Function

symbol description
lhx1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including animal organ development; gastrulation; and regulation of transcription, DNA-templated. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Is expressed in several structures, including axis; mesoderm; nervous system; renal system; and shield. Orthologous to human LHX1 (LIM homeobox 1).

NR:

description
LIM/homeobox protein Lhx1

GO:

id name namespace
GO:0001705 ectoderm formation biological_process
GO:0001706 endoderm formation biological_process
GO:0021527 spinal cord association neuron differentiation biological_process
GO:0072077 renal vesicle morphogenesis biological_process
GO:0090009 primitive streak formation biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:2000744 positive regulation of anterior head development biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0021871 forebrain regionalization biological_process
GO:0061205 paramesonephric duct development biological_process
GO:2000768 positive regulation of nephron tubule epithelial cell differentiation biological_process
GO:0072178 nephric duct morphogenesis biological_process
GO:2000543 positive regulation of gastrulation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0021937 cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0097477 lateral motor column neuron migration biological_process
GO:0040019 positive regulation of embryonic development biological_process
GO:0021702 cerebellar Purkinje cell differentiation biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0090190 positive regulation of branching involved in ureteric bud morphogenesis biological_process
GO:0010842 retina layer formation biological_process
GO:0072049 comma-shaped body morphogenesis biological_process
GO:0072050 S-shaped body morphogenesis biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0009791 post-embryonic development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09372 LHX1; LIM homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259552.1 True 3440 mRNA 0.45 5 15060778 15068967
XM_043259553.1 False 3410 mRNA 0.45 5 15060778 15068970

Neighbor

gene id symbol gene type direction distance location
brip1 brip1,LOC107664950,LOC107743644,LOC107757032,LOC107685073 coding downstream 83744 14949954 ~ 14977034 (-)
ccdc9 LOC107548566,LOC107743647,LOC107664938,LOC107562957,LOC107685066,LOC107723874 coding downstream 375844 14672084 ~ 14684934 (-)
kiaa0753 kiaa0753,LOC107685065,LOC107548565,LOC107723875 coding downstream 395966 14646646 ~ 14664812 (-)
pitpnm3 pitpnm3,LOC107664939,LOC107685064,LOC108425893,LOC108277935 coding downstream 415788 14577887 ~ 14644990 (-)
LOC122358978 LOC107664896,LOC107743719,LOC107548544,LOC100537389 coding downstream 490656 14561357 ~ 14570122 (-)
dhrs13a.3 dhrs13a.3,LOC107756995,LOC107589701,LOC107669749,LOC107685074,LOC108427000 coding upstream 173054 15242024 ~ 15244405 (-)
cryba1a cryba1a,LOC107743738,LOC107669750,LOC107589703,LOC107548573,LOC107685075,LOC107757013,LOC108426912 coding upstream 176646 15245616 ~ 15253898 (-)
foxn1 LOC107669715,LOC107548559,LOC107743735,LOC107757374,LOC107685158,LOC107589739 coding upstream 197068 15266038 ~ 15278688 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 coding upstream 218549 15287519 ~ 15295635 (-)
scarf1 scarf1,LOC107743638,LOC107589706,LOC107757362,LOC107683267 coding upstream 231111 15300081 ~ 15306315 (-)
G106809 NA non-coding downstream 134777 14925719 ~ 14926001 (-)
LOC122358902 tbx2b,LOC107757046,LOC107589697,LOC107685069 non-coding downstream 167317 14885186 ~ 14893461 (-)
G106710 NA non-coding downstream 507478 14552783 ~ 14553300 (-)
G106707 NA non-coding downstream 511875 14547830 ~ 14548903 (-)
G106705 NA non-coding downstream 513312 14537578 ~ 14547466 (-)
G106960 NA non-coding upstream 3444 15072414 ~ 15079637 (-)
G106965 NA non-coding upstream 14238 15083208 ~ 15083415 (-)
G106966 NA non-coding upstream 15260 15084230 ~ 15084452 (-)
G106967 NA non-coding upstream 34995 15103965 ~ 15104289 (-)
LOC122358947 NA non-coding upstream 82119 15151089 ~ 15165273 (-)
LOC122359058 dph1,LOC107585615,LOC107664954,LOC107685060 other downstream 738339 14298251 ~ 14322439 (-)
mmp20a NA other downstream 1051492 14003741 ~ 14009286 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other downstream 1135051 13908806 ~ 13925727 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other downstream 1155284 13883920 ~ 13905494 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other downstream 1179084 13878585 ~ 13881694 (-)
G107064 eml2,LOC107669753,LOC107548590,LOC107743713,LOC107685092 other upstream 707538 15776508 ~ 15782011 (-)
xaf1 LOC107714184,LOC107578343 other upstream 838392 15907362 ~ 15910474 (-)
ly6d si:ch211-207n23.2,LOC107587620,LOC107683433,LOC107666183 other upstream 886039 15955009 ~ 16063740 (-)
LOC122359003 LOC107714165,LOC107588126 other upstream 1343666 16412636 ~ 16426414 (-)
msi2b msi2b,msi2,LOC108425902,LOC107682662,LOC108435815,LOC108277875,LOC107587484,LOC105028669,LOC106603292 other upstream 1482221 16551191 ~ 16762064 (-)

Expression


Co-expression Network