cryba1a (cryba1a,LOC107743738,LOC107669750,LOC107589703,LOC107548573,LOC107685075,LOC107757013,LOC108426912)


Basic Information

Item Value
gene id cryba1a
gene name cryba1a,LOC107743738,LOC107669750,LOC107589703,LOC107548573,LOC107685075,LOC107757013,LOC108426912
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15245616 ~ 15253898 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258940.1
TCTTGAAGCAGCCTCTGGGATGCGTGTGCATGTCCCTCACTCTTCGCACAGACTGGATCTGGGGGTAATGGGCGCCCCATTCGTTCCAGTGTTTGTAGGATCCAAATTCAAACAGGTCTATCGGCATTGAGATATCTTCAAGGATGGCTCTGACTAATCCCATGCCACTTGGGCCATGGAAGCTCACAGTCTATGACCAAGAGAACTTCCAAGGCAAGCGCATGGAGTTCACCTCAGCCTGTCAGAACATCATGGAATGTGGCATGGACAATGTCCGCTCTCTGAAGGTGGAGTGTGGCGCCTGGGTGGGCTATGAACACTCCAGCTTCTGTGGGCAGCAGTTCATCTTGGAAAGAGGTGACTATCCTCGCTGGGAGTCTTGGAGCGGCAGCAATGCTTACCACATTGAGAGGCTAATGTCCTTCCGGCCAATCTGCTCTGCTAACCACAAGGAGTCAAAGATTACCGTCTTTGAGCGGGAGAACTTTATTGGCCACCAGTGGGAGATAATCGATGACTACCCCTCTCTCCAGGCCATGGGCTGGCCCTCCAATGAGATCGGATCAATGCAGGTGCAAAGTGGGGCCTGGGTTTGTTACCAGTACCCCGGTTACCGTGGTTACCAGTACATCATGGAGTGTGACCACCACGGCGGCGAGTACAAACACTACAGGGAGTGGGGCTCCCACGCTCAGACCTTCCAGGTGCAGTCCCTCCGCCGGGTTCAGCAGTGAGGGCACATCGCCCAGCTCCCTTCCTCCCTCccccacctcctcctcctcttcctcctccacctctTCCTCACCTCCACCCCTTCATTCCGAAACCGGCAAGCCCAGCACAGGCTGAACGTCTGGTGCATTCGGTAGATGTTTACAGAGCTTTCTTCTTTCTGCATGCCATCGATTTGAAAGAAAAGAGTGAGAGGAAGAACTCAAGCGGACTGATTCTGTGAGTGGCACGGTGGTGACTTAAGCTTTGCTCCTCATCGCTGTCATGATGCAGTCTGTGCTAAAGAGATCAATAAAGGGTACACTTATGGAAACTACCTATTGTGAGAGTTTGTTTGATGCATGTAGCTGAAATGGCCCAAATTGTAATATCACAAAATTGGACCATCATTACCACCAAGATATCCTATAACTATTGTTATAAAAGACTTAATGACCAATGGGATTTGAGTACTGGGACAAAATAAGTTAgggataaaataataaataataaatatgtatcaAGGAATTATTGTTCTCACTTTTGTTTGGGTGGAGTACTGATTTTCTTTGCCTGTCACCCATCATGattacatgcaaaaataatgtaCCAAAACTTTGTAATAAATTTTCATCTTTGTTTCATCTTCATCGCAATTagacagaaacatttttttttttttttgatttgggATGCATTTAAAGCTATAGCCAGTTTTGAACCAAAGtttagaaaatctaaaaatgcaatattaagtTATGTAATG
>XM_043258941.1
TCTGGAGACCGTTGTGTGGAACTCCTGAGCGCTTGCAGCTATTTGTTGGGTCTATCGGCATTGAGATATCTTCAAGGATGGCTCTGACTAATCCCATGCCACTTGGGCCATGGAAGCTCACAGTCTATGACCAAGAGAACTTCCAAGGCAAGCGCATGGAGTTCACCTCAGCCTGTCAGAACATCATGGAATGTGGCATGGACAATGTCCGCTCTCTGAAGGTGGAGTGTGGCGCCTGGGTGGGCTATGAACACTCCAGCTTCTGTGGGCAGCAGTTCATCTTGGAAAGAGGTGACTATCCTCGCTGGGAGTCTTGGAGCGGCAGCAATGCTTACCACATTGAGAGGCTAATGTCCTTCCGGCCAATCTGCTCTGCTAACCACAAGGAGTCAAAGATTACCGTCTTTGAGCGGGAGAACTTTATTGGCCACCAGTGGGAGATAATCGATGACTACCCCTCTCTCCAGGCCATGGGCTGGCCCTCCAATGAGATCGGATCAATGCAGGTGCAAAGTGGGGCCTGGGTTTGTTACCAGTACCCCGGTTACCGTGGTTACCAGTACATCATGGAGTGTGACCACCACGGCGGCGAGTACAAACACTACAGGGAGTGGGGCTCCCACGCTCAGACCTTCCAGGTGCAGTCCCTCCGCCGGGTTCAGCAGTGAGGGCACATCGCCCAGCTCCCTTCCTCCCTCccccacctcctcctcctcttcctcctccacctctTCCTCACCTCCACCCCTTCATTCCGAAACCGGCAAGCCCAGCACAGGCTGAACGTCTGGTGCATTCGGTAGATGTTTACAGAGCTTTCTTCTTTCTGCATGCCATCGATTTGAAAGAAAAGAGTGAGAGGAAGAACTCAAGCGGACTGATTCTGTGAGTGGCACGGTGGTGACTTAAGCTTTGCTCCTCATCGCTGTCATGATGCAGTCTGTGCTAAAGAGATCAATAAAGGGTACACTTATGGAAACTACCTATTGTGAGAGTTTGTTTGATGCATGTAGCTGAAATGGCCCAAATTGTAATATCACAAAATTGGACCATCATTACCACCAAGATATCCTATAACTATTGTTATAAAAGACTTAATGACCAATGGGATTTGAGTACTGGGACAAAATAAGTTAgggataaaataataaataataaatatgtatcaAGGAATTATTGTTCTCACTTTTGTTTGGGTGGAGTACTGATTTTCTTTGCCTGTCACCCATCATGattacatgcaaaaataatgtaCCAAAACTTTGTAATAAATTTTCATCTTTGTTTCATCTTCATCGCAATTagacagaaacatttttttttttttttgatttgggATGCATTTAAAGCTATAGCCAGTTTTGAACCAAAGtttagaaaatctaaaaatgcaatattaagtTATGTAATG

Function

symbol description
cryba1a Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract and cataract 10 multiple types. Orthologous to human CRYBA1 (crystallin beta A1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258940.1 True 1477 mRNA 0.47 6 15245616 15253898
XM_043258941.1 False 1411 mRNA 0.46 6 15245616 15248983

Neighbor

gene id symbol gene type direction distance location
dhrs13a.3 dhrs13a.3,LOC107756995,LOC107589701,LOC107669749,LOC107685074,LOC108427000 coding downstream 1211 15242024 ~ 15244405 (-)
lhx1a lhx1a,LOC107743643,LOC107669762,LOC107685180,LOC108277614,LOC107757026,LOC107589700 coding downstream 176646 15060778 ~ 15068970 (-)
brip1 brip1,LOC107664950,LOC107743644,LOC107757032,LOC107685073 coding downstream 268582 14949954 ~ 14977034 (-)
ccdc9 LOC107548566,LOC107743647,LOC107664938,LOC107562957,LOC107685066,LOC107723874 coding downstream 560682 14672084 ~ 14684934 (-)
kiaa0753 kiaa0753,LOC107685065,LOC107548565,LOC107723875 coding downstream 580804 14646646 ~ 14664812 (-)
foxn1 LOC107669715,LOC107548559,LOC107743735,LOC107757374,LOC107685158,LOC107589739 coding upstream 12140 15266038 ~ 15278688 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 coding upstream 33621 15287519 ~ 15295635 (-)
scarf1 scarf1,LOC107743638,LOC107589706,LOC107757362,LOC107683267 coding upstream 46183 15300081 ~ 15306315 (-)
LOC122359496 rilp,LOC107548577,LOC107669761,LOC107756964,LOC107685078,LOC107589707,LOC107743716 coding upstream 52554 15306452 ~ 15314518 (-)
prpf8 prpf8,LOC107685080,LOC107589708,LOC107548576,LOC107743637,LOC107756948,LOC107669735 coding upstream 61487 15315385 ~ 15327714 (-)
G106961 NA non-coding downstream 703 15244533 ~ 15244913 (-)
G106993 NA non-coding downstream 7268 15238105 ~ 15238348 (-)
G106992 NA non-coding downstream 11865 15233422 ~ 15233751 (-)
G106991 NA non-coding downstream 15450 15229927 ~ 15230166 (-)
G106990 NA non-coding downstream 15860 15229299 ~ 15229756 (-)
G106994 NA non-coding upstream 45396 15299294 ~ 15299616 (-)
G107019 myo1c,LOC107756890,LOC107743634 non-coding upstream 101291 15355189 ~ 15356673 (-)
G107034 NA non-coding upstream 136342 15390240 ~ 15394077 (-)
G107053 NA non-coding upstream 220562 15474460 ~ 15476481 (-)
G107055 nova2,LOC107669728,LOC107589717,LOC103039352,LOC107685091,LOC107548550 non-coding upstream 278183 15532081 ~ 15652810 (-)
LOC122359058 dph1,LOC107585615,LOC107664954,LOC107685060 other downstream 923177 14298251 ~ 14322439 (-)
mmp20a NA other downstream 1236330 14003741 ~ 14009286 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other downstream 1319889 13908806 ~ 13925727 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other downstream 1340122 13883920 ~ 13905494 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other downstream 1363922 13878585 ~ 13881694 (-)
G107064 eml2,LOC107669753,LOC107548590,LOC107743713,LOC107685092 other upstream 522610 15776508 ~ 15782011 (-)
xaf1 LOC107714184,LOC107578343 other upstream 653464 15907362 ~ 15910474 (-)
ly6d si:ch211-207n23.2,LOC107587620,LOC107683433,LOC107666183 other upstream 701111 15955009 ~ 16063740 (-)
LOC122359003 LOC107714165,LOC107588126 other upstream 1158738 16412636 ~ 16426414 (-)
msi2b msi2b,msi2,LOC108425902,LOC107682662,LOC108435815,LOC108277875,LOC107587484,LOC105028669,LOC106603292 other upstream 1297293 16551191 ~ 16762064 (-)

Expression


Co-expression Network