brip1 (brip1,LOC107664950,LOC107743644,LOC107757032,LOC107685073)


Basic Information

Item Value
gene id brip1
gene name brip1,LOC107664950,LOC107743644,LOC107757032,LOC107685073
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 14949954 ~ 14977034 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258184.1
CGTACAGACGTCGTGTTTGGTGCTGCTGCGCGGGAGTTTCATTTTTGTGCCTTATTTTGTTTACACTGCTACTTTTAACCGTCAACATGCATCTTTTCTTTGTGAGGTGACCCATCTGAAATTCCGCGTAATCTCATTACATCTGAGATAGCGACACCCTCCATTTGGACACAGAATGGCTGCAGCTCCAGTAGAGTACACCATAGGAGGGGTGAAAATAAACTTCCCCTGCAAAGCTTATCCCTCTCAGCTGGCCATGATGAACTCAATCATTCGTGGACTTAACAATGGGCAGCACTGTCTGTTGGAGAGCCCTACCGGCAGCGGAAAGAGTCTTGCTTTGCTTTGTTCAGCGCTCGCATGGCAGCAAGCACAGTTTGGTAAAGAGCAGGATGCAGGTTCTAGCCCTGCTGACTGTAAGAAACCAACAGTTGCTACTCCATGTCAGTGTGTGTGCCATAACCGAAACGCACACCCCGCTTCCAGCAGCACGGCATCTAAACCACCTCCAGGTGATCTTCCTCATGAAGGTACATCTGCTCAAGCTACAACCCCtctctcaaaagaaaCCATCAAAAATGACCAGTCTAGGAAGTCCACTTTGTCGTCTTGTCTCTCTGAGAAACTTCAGGCCTCTCTCTCCAATGGAGAACAAGATGATGATTTTAAGATTGACAGGAAGCGTATTCGTGCTCCAAGCACAGAGCAGAAAAGCAGTAAGCGAAGATGTCTCGAGCGAGGAGTGATTTACATtgatgacgatgatgaagaggaggagcaTCTGGAGAGGCCGGTGCCGCGGGATCGGAGTTGGAGCGTGGAATTGAACGGTGGTGCCAGAGCTGACAGCTGCCAGTCGCAGCCACAGTGTTGTTCTCCCATGTCTTGTTCACTCTGTCCTTGCGCCAACCTCAAAGCAGTACAGAAAACAGTCAAAAAGTCCAAGGACAGCGATAAAGAAGGAGAGGGAAATGGAAGGAAACAGATCCCAAAGATCTTCTTCGGCACTCGCACTCATAAGCAGATCACACAGATTGCACGCGAGCTCAAACGGACTCTTTACTCCACCGTGCCCATGACGATACTGTCCAGCCGAGACCACACCTGTGTCCATCCTGAAGTGGTGCCTCATGCCAACCGCAACGAGCGCTGCAAGGAGCTGCTGGAGGCCAAGAACgGGCTGTCTTGTAGATACTACCACAATGTGCATAAAATGCGTGATCAGAGCACTTTGCAGTGGGTTCATGGGCTACATCAGGCCTGGGACATTGAGGATCTGGTCCGTCTTGGAGGTAAGCTGCGGTCCTGTGCTTACTACGCAGCTCGGGAGCTCATGCAAGATGCCTGCATTGTGTTCTGTCCTTACAACTACCTGCTGGACCCTCTCATTCGTGAAAGTATGGAAATCAATCTGAAGGAGCAGATTGTGGTGCTGGATGAGGCTCATAACATAGAAGACTGTGCCCGTGAGAGTGCCAGTTACACTCTAAACCAAGCTCAGCTATTACTGGCACGCGATGAGATGGATGGAATGGTGACACACAACATTCGGCGAGATCAACACAGGCCTCTGCTAGCTTTCTGCTGCAGTCTTGCCAATTGGCTGCAGGAAAGCTGCAATAGCTTGGAGGAGCGTGAATATGAGTCTTCCTGTAAGGTCTGGACAGGGACAGAGATTCTTGGCATTTTCCATGGTCTTGGCATCACAGCAGACACTTTCTCTATGCTACAGAAAAACCTGGCAGCTGTGCTGGAGAAGGAGGAGCGGATCGGGCTAGTGAACGGGAGAGAAGACGTGGTGCAGGTTCCCACCATCAGCTCTAACACTCAGTCAATGCTCAAAAGCCTCTTTATGGTGCTGGAATTTCTTTTCAGACAAAATTGCAGGTTTGCAGATGATTACCGTGTGGCCCTCCAGCAGAGCTACATGTGGACCACCCAGCAGGACCTGCCTGACGCTCAGGGCTTTTTTGCACGACCCCAGCGCCGCCGACAGAGCACCCGCACCAAAACTCTGGTGCACACCCTGAGCTTTTGGTGCCTCAACCCTGCTGTGGCGTTTTCAGATCTGAGTGGCTCAGTACGGAGTATTGTGTTGACCTCGGGCACCCTCTCTCCCATGGGCTCTTTTTCCTCTGAGCTGGGCATCAGATTCTCCATCCAGCTAGAGGCGAATCATGTCATCAGCAAGTCACAGGTCTGGGTCGGTACAGTTGGTTCAGGGCCTCAGGGTCGTAAACTTTGCGCCACATTTCAGCATGCAGAGACGTTTGCCTTCCAGGATGAAGTAGGGGCCTTACTGTTGAAAGTCTGCCACACAGTGAGCCGAGGAGTTCTCTGCTTCCTGCCATCCTACAAAATGTTAGATAAACTGAGGGACCGCTGGGTGAACACAGGTCTGTGGGACAAACTTGAGGAGCGGAAGACCGTAATTACAGAGCCACGTGGTGGTGGCAAGGGTGATTTTGATGAGTTGCTGCGGACATACTATGAAGCCATCAGAGGAACAGCAGCCAACAGTGAAATCAGAGATGGAGCACTGCTGGTTGCGGTTTGCAGAGGGAAGGTTAGCGAGGGCTTAGACTTCACTGATGATAATGCCAGAGCAGTGGTCACCATTGGTATCCCGTTCCCCAATATCAAAGACTTGCAGGTTGAACTGAAGATGAAATACAACGACAAGCATGCCAAGTCGCGAGGGCTTCTGCCCGGTGGGCGCTGGTATGAGATTCAAGCATATCGGGCACTAAACCAGGCACTTGGAAGGTGTATACGACATCGGAATGACTGGGGTGCACTTATCCTGGTTGATGACAGATTTAGGACGAACCCGAATAAATACATCACAGGCCTGTCAAAGTGGGTGCGTCAGCTAGTGAGGCACCATGACACCTTCACTGGCGCCATGCAGTCCCTGGAGTCCTTTTCTCAAGGCCAGGGGGGGGCAGTAGAGACCTTCGAAGAGAGACAATCTCAGGCTGCCTCTCAACTCCCCAGCCCCTCCACTGTTACCTCACCCCCTCCTGAGATAATCGCCCCCCTCAAGCCATTTGACCCTAAGATTGCACCACCGAACCTACACACCGAAGTGCAGGCGGCCAACTCTGAGAGCATTTCTTCTGAATCAGGTGACCAAAAGAATATGCAGCATCCATCTGAACCAAGCAGAGAATGTAATGTCCAAAGAACGCCATGGCATACAAGCCGTCTCTTCACTTCCACTCCAGTCAGTACTCAATTCAAGACTCCTATTTTTCAATCTGATCCAGAAGTAAGTTCAGTGATCAACAAGCAAGTTCACTGTGAAGTTATTCCTGTGGCACCAAAGCACCAAAAAAATGGTGTTCCTGACCTAAATGATCGTTCAGTTGAACCTCAACTTGAGCAGGTCTTTGTGATCCCTACCTCTACTTCAAAGCAGAACACCAGAGGAATGGACCATGAAGATACTGAAGAGAATGAACAAAGTATCTTCTACAGCCCTGAGCTGTTTGAAGCAGATGAGGAGGAGAAGGAAGAGACTACCGAGGTGGAGAAATCTCCACCAGAAGTTAGCCATACTCCCGCTAATAGCACAGCCAGTGTTCTTTTGGAGGACCTCTTTGGTTCAGAGGAAGCAAAGAGAACATTGTCTGAAGAGCATGTGAGCAGCACTGTCCCGGACAACACATTGTTACAGGGTAGTACAGAGCAGACAGGTTTAAACTCTGGGCCAGATATTGGCTCACAAAATGGCCCCAGCAGTAGTCGGTTACATAGGCTCTCCAGATGTAGGCAGAAAAGGCCCAGCTCATCAGCAGCATCAGGTAAACTCACCAATTATTTTAAACGCATTCCCCCAAGTAGCCAAGCGTGCATCATTACAATTGATGACTGATGAAGTTAAGCATTGTGTATgatgaggaaagaaaaaaactaatctaTGTAAGTCTATTTTGTCTCATTTAGTGTAATAATGGACATTTTAATCGTACCCCCAAATATCAACATGAGACTGCTGATCTGTCTTTAATATGCTCCTGAgaatatgtgtatgttttataagaatGATTAAAATAAGTGACAAGCA

Function

symbol description
brip1 Predicted to enable DNA helicase activity. Predicted to be involved in double-strand break repair involved in meiotic recombination and nucleotide-excision repair. Predicted to act upstream of or within nucleobase-containing compound metabolic process. Predicted to be active in nucleus. Is expressed in central nervous system; lens; oral epithelium; and pectoral fin fold. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group J; breast cancer; colorectal cancer; and thrombocytopenia. Orthologous to human BRIP1 (BRCA1 interacting helicase 1).

NR:

description
Fanconi anemia group J protein isoform X1

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258184.1 True 4069 mRNA 0.49 20 14949954 14977034

Neighbor

gene id symbol gene type direction distance location
ccdc9 LOC107548566,LOC107743647,LOC107664938,LOC107562957,LOC107685066,LOC107723874 coding downstream 265020 14672084 ~ 14684934 (-)
kiaa0753 kiaa0753,LOC107685065,LOC107548565,LOC107723875 coding downstream 285142 14646646 ~ 14664812 (-)
pitpnm3 pitpnm3,LOC107664939,LOC107685064,LOC108425893,LOC108277935 coding downstream 304964 14577887 ~ 14644990 (-)
LOC122358978 LOC107664896,LOC107743719,LOC107548544,LOC100537389 coding downstream 379832 14561357 ~ 14570122 (-)
slc47a4 si:dkey-175a17.4,LOC107743742,LOC107664908,LOC107548554,LOC107685178,LOC107562953,LOC107744808 coding downstream 389097 14553519 ~ 14560857 (-)
lhx1a lhx1a,LOC107743643,LOC107669762,LOC107685180,LOC108277614,LOC107757026,LOC107589700 coding upstream 83744 15060778 ~ 15068970 (-)
dhrs13a.3 dhrs13a.3,LOC107756995,LOC107589701,LOC107669749,LOC107685074,LOC108427000 coding upstream 264990 15242024 ~ 15244405 (-)
cryba1a cryba1a,LOC107743738,LOC107669750,LOC107589703,LOC107548573,LOC107685075,LOC107757013,LOC108426912 coding upstream 268582 15245616 ~ 15253898 (-)
foxn1 LOC107669715,LOC107548559,LOC107743735,LOC107757374,LOC107685158,LOC107589739 coding upstream 289004 15266038 ~ 15278688 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 coding upstream 310485 15287519 ~ 15295635 (-)
G106809 NA non-coding downstream 23953 14925719 ~ 14926001 (-)
LOC122358902 tbx2b,LOC107757046,LOC107589697,LOC107685069 non-coding downstream 56493 14885186 ~ 14893461 (-)
G106710 NA non-coding downstream 396654 14552783 ~ 14553300 (-)
G106707 NA non-coding downstream 401051 14547830 ~ 14548903 (-)
G106705 NA non-coding downstream 402488 14537578 ~ 14547466 (-)
G106960 NA non-coding upstream 95380 15072414 ~ 15079637 (-)
G106965 NA non-coding upstream 106174 15083208 ~ 15083415 (-)
G106966 NA non-coding upstream 107196 15084230 ~ 15084452 (-)
G106967 NA non-coding upstream 126931 15103965 ~ 15104289 (-)
LOC122358947 NA non-coding upstream 174055 15151089 ~ 15165273 (-)
LOC122359058 dph1,LOC107585615,LOC107664954,LOC107685060 other downstream 627515 14298251 ~ 14322439 (-)
mmp20a NA other downstream 940668 14003741 ~ 14009286 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other downstream 1024227 13908806 ~ 13925727 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other downstream 1044460 13883920 ~ 13905494 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other downstream 1068260 13878585 ~ 13881694 (-)
G107064 eml2,LOC107669753,LOC107548590,LOC107743713,LOC107685092 other upstream 799474 15776508 ~ 15782011 (-)
xaf1 LOC107714184,LOC107578343 other upstream 930328 15907362 ~ 15910474 (-)
ly6d si:ch211-207n23.2,LOC107587620,LOC107683433,LOC107666183 other upstream 977975 15955009 ~ 16063740 (-)
LOC122359003 LOC107714165,LOC107588126 other upstream 1435602 16412636 ~ 16426414 (-)
msi2b msi2b,msi2,LOC108425902,LOC107682662,LOC108435815,LOC108277875,LOC107587484,LOC105028669,LOC106603292 other upstream 1574157 16551191 ~ 16762064 (-)

Expression


Co-expression Network