mmp20b (mmp20b,LOC107743745,LOC107585621,LOC107664917)


Basic Information

Item Value
gene id mmp20b
gene name mmp20b,LOC107743745,LOC107585621,LOC107664917
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 14009424 ~ 14013067 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259910.1
ACTGGCCATTTTCAGAAGCTTCTGTGGTCTGCCGAGGGGACATGCAGGTTTTACTCTGTCTGATTTGTGCCTTTGGCCTTTTTGGTCAGTATCATCCAGCACCTTTACCACTGGAGGATGACGGATCGGTGCATCCGACGAGACCTGTTCAGAACGACCTGTCCCTGGCAACAAAATACCTGCAGCAATTCTACAGTTTCCAAGCAGATCCCGCGGGCCGCAGGAGGAGAAGTCGTCCCTCGTTCTCTTCCAAATTGAAAGACATGCAGAGCTTTTTCGGGCTGAACAGGACAGGAACCCTGAACCCAGACACCCTCGCTGTCATGAGCGCTCCTAGATGTGGCGTCTCAGATGTGGAGGATTACAGTCACAGACGTGGAAACAGGTGGAAGAAAAGCGTCATCACTTATGGCGTTGGGAGATACACCAGTGACTTACCAGTGAATACAGTGGACACTCAGATCGAGTCGGCTCTAGATGCATGGGCAAAGGCAAGCCCTCTCACTTTCCAGAGGTCATATTCTCACCAGGCGGACATCATGGTGGAGTTTGTCGGAAACGAACATGGAGACTCCTTCCCCTTTGATGGTCCAGACGGCACACTGGCCCACGCTTTTGGTCCGGGGGAAGGCATCGGGGGGGACGTTCATTTTGATGAAGCTGAAGCATGGACGGCTGGGTTCAAAGGGTTTAACCTGTACGTGGTAGCTGCACATGAGTTTGGTCATGCACTTGGTTTAAAACACTCGCAAAACCCGGAGTCGGTGATGTATCCGACgtacaaaaatagaaaaacacacaacctGCTCTCTAGTGAAGATATCATGAACATCAACACACTCTATGGGCCAAGGGACAAAAGGCCCCATCCATCTTCAAGATTTAGTTGGAGCTATCCCAGCAACCCCTGGTACAGTGGTTCATATTTCCCTGTGTCATTCAAGGACACATGTAATTCCGATCTGACTTTTGATGCGGTGACTACTGTAGGAGAAGCTATTTTCTTCTTCAGGGACAGATACCTGTGgatcaaacacaataatcaaAATGATATAAAGGAAGGTCCCATCAGCAATTTCATGCCAAAAATTGATTGTCAGATTGACGCTGCTTACTGGGTCCCTCAACGGTCAACAGCGTATCTGTTCAATGGGACAATTTTCTGGACTGTGAAAGGATCCCAAGTCAAAGGCAGACCGAAAAACATCAGCAGTCTGGGGTTCCCGTCATGGGTACAGCAGATAGATGCTGCGGTCCACATTCACAAAACTGTACACACCCTATTCTTCACCCAACACCAGTACTGGAGgtATAATGAACACAACAAGACGATGAATGACTCCAGCCCACGGAACATTTCTGATGATTTCCCAGAAATAAATGGACCTATAAGTGCAGCAATTTATAAAGATGGTTCTCTTCATTTCTTTGTTGGCTCAGATGTGTATAAATATGACGTCAAACGAAAGGAAATTATCGGAGCAGATAAGACAACTTCCTGGCTTGGATGTTAACAGACATTCATTAGACTAATAGTTCCTAAATccgataattttttttaaaaggtgaaTCGTTATTTTCGCAATTCTGGTTAATGCAGCAAAAGTGGCATTACACGTGACAATTCACCTGTAAAGATGGCATTAAGTTGTACTGAATTGTTTTTTCAGCATGCCGTGCTTGTGTTTTATGtggtaaatgcaaatgtatctGAAAAGTCAGAATGTGGTGTAAATTCAAATTTACGACTGTATCATTACTTCTGAAGAAAATAACTTGTTTGGCATTCAGTTCTGCAGTTGCATGACTGAGGTAAACCAAAGTATTTAGACTGAATGTGCACTAATCAGTGCGTGTGTTCatgactgtaataaaataaggtAAAAGAGTGCTTGTGGACATCCTTTACATGTAAAATGAGGATTTCGGAATATACAAAATGAACATAATCTTAAACCATTTACAACAAATCATGATAATCATAATCCTCTTCAGCCACTAAGACTACTGATGTAACACTAGACGTGATCTCATTTTGTGGACAACAAAAGCCACTAAATGCCTGACAATA

Function

symbol description
mmp20b Predicted to enable metalloendopeptidase activity. Predicted to be involved in amelogenesis; collagen catabolic process; and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Human ortholog(s) of this gene implicated in amelogenesis imperfecta hypomaturation type 2A2. Orthologous to human MMP20 (matrix metallopeptidase 20).

NR:

description
matrix metalloproteinase-20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259910.1 True 2071 mRNA 0.44 10 14009424 14013067

Neighbor

gene id symbol gene type direction distance location
hif1al LOC107744792,LOC107664924,LOC107743660,LOC107585591 coding downstream 14110 13982867 ~ 13995314 (-)
tlcd2 tlcd2,LOC107664963,LOC107743747,LOC107585588,LOC107592621,LOC107744789,LOC107685052,LOC103028751 coding downstream 53808 13940355 ~ 13955616 (-)
ccdc92ba si:dkey-54n8.4,LOC107664895,LOC107743748,LOC107685051,LOC107585587,LOC107744787 coding downstream 71054 13926791 ~ 13938370 (-)
LOC122358517 plekhg2,LOC107586265,LOC107662784,LOC107657556,LOC107726101,LOC107729120 coding downstream 267573 13715585 ~ 13741851 (-)
LOC122359517 pipox,LOC107664955,LOC107585605 coding downstream 316795 13678485 ~ 13692629 (-)
tp53i13 LOC107664927,LOC107585595,LOC107743658 coding upstream 1895 14014962 ~ 14020759 (-)
taok1a taok1a,LOC107585593,LOC107664926,LOC107743657,LOC107744793,LOC107592626,LOC107685056,LOC108425880 coding upstream 8431 14021498 ~ 14041149 (-)
LOC122359057 dph1,LOC107664954,LOC107685060,LOC107585615 coding upstream 164473 14177540 ~ 14252042 (-)
rpa1 rpa1,LOC107562955,LOC107548543,LOC107743720,LOC107685155 coding upstream 480902 14493969 ~ 14515049 (-)
serpinf2b serpinf2b,LOC107743653,LOC107664923,LOC107548563,LOC107562956,LOC107744799,LOC107685062 coding upstream 502631 14515698 ~ 14520262 (-)
G106588 NA non-coding downstream 33223 13972050 ~ 13976201 (-)
G106572 LOC107664934,LOC107743664,LOC107585584,LOC103047044,LOC107744786,LOC107592620,LOC107690414 non-coding downstream 191544 13817388 ~ 13817880 (-)
G106561 NA non-coding downstream 211176 13785178 ~ 13798248 (-)
G106548 NA non-coding downstream 253264 13753322 ~ 13756160 (-)
G106541 NA non-coding downstream 340045 13667571 ~ 13669379 (-)
G106631 NA non-coding upstream 40357 14053424 ~ 14053535 (-)
G106633 NA non-coding upstream 45908 14058975 ~ 14059178 (-)
G106634 NA non-coding upstream 49505 14062572 ~ 14062837 (-)
G106635 NA non-coding upstream 53264 14066331 ~ 14066837 (-)
G106637 NA non-coding upstream 68743 14081810 ~ 14083998 (-)
mmp20a NA other downstream 138 14003741 ~ 14009286 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other downstream 83697 13908806 ~ 13925727 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other downstream 103930 13883920 ~ 13905494 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other downstream 127730 13878585 ~ 13881694 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other downstream 258367 13744555 ~ 13751057 (-)
LOC122359058 dph1,LOC107585615,LOC107664954,LOC107685060 other upstream 285184 14298251 ~ 14322439 (-)
G107064 eml2,LOC107669753,LOC107548590,LOC107743713,LOC107685092 other upstream 1763441 15776508 ~ 15782011 (-)
xaf1 LOC107714184,LOC107578343 other upstream 1894295 15907362 ~ 15910474 (-)
ly6d si:ch211-207n23.2,LOC107587620,LOC107683433,LOC107666183 other upstream 1941942 15955009 ~ 16063740 (-)
LOC122359003 LOC107714165,LOC107588126 other upstream 2399569 16412636 ~ 16426414 (-)

Expression


Co-expression Network