hspa13 (hspa13,LOC107666191,LOC107714176,LOC107682527)


Basic Information

Item Value
gene id hspa13
gene name hspa13,LOC107666191,LOC107714176,LOC107682527
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 16043268 ~ 16047351 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258437.1
CAGCCAAACAGTCTGCATTAGGTCGACGTGTACGTTCGCTCAGTCGGCGCAGACACTGAATGAACATCTTTTACACAAATATCCATAACATATTAGGTTGGAATCATGGCCGGGGAAATGTCCATAATAGGTTCCGTCATTCTGGCTTTGTTCCTGGCAGGATATCTGGGACAGCAGTACCTGCCCCCTCCAAAGCCCAGGGTCATTGGGTTGGATCTCGGGACCACCTTCTGCTCGGTGGGAGTGTTTCAGCCTGGCACAGGCGACATTGAGGTTATCGAAGATGACAAGGGTCGCAAAAGCATTCCGAGTGTGGTGTCATTCACCCCCACCGGTGTCTTTTCTGGACACGAGGGCCAGGAATTGTCTGACATAAATCCTCAAAACACTATATACGATGCTAAGAGATTTATAGGAAAGATTTTCGACGAAGACACTTTAGAGAAAGAAAGCGCACGATACCCGTTTAAGGTGATATTCAACAACGGGAGTGCAGAATTTTTAGTCTCTACAAATGGCACCTTCACAGTTACACCTGAATTCATCGGATCCCGTCtgctgctgaaaatgaaaaagatggcGGAGAAGCAACTAGGAGTACCTATCGATAAAGCCGTTATATCAGTGCCAGCAGAGTTtgatgagagacagagaaactaCACCATAAGGGCCGCTAACCTGGCTGGGCTGGACATCCTGCGTGTGATCAACGAGCCCACGGCGGCGGCGATGGCTTATGGACTGCATAAAGCCGAAGTGTTTAATGTGCTGGTGGTGGATCTGGGAGGAGGAACACTAGATGTGTCGCTTCTTAATAAGCAGGGCGGCATGTTTCTTACCAGAGCAATGGCAGGTAATAACAAGCTCGGGGGGCAGGACTTCACCCAGCGTTTGCTGCAGTACACCATCGAGCGAGCGCGGCAGCAGTACGGCATTCCTCCTACTCTTAAAGAAGACATCCATCTCCTCCGACAGGCCGTGGAAGCCGCCAAACTCAACCTCACCCAGGAGCCTCACATTCACCTCCGCGTTCCTCTTCACCTGCAGACAACGGGAATGAACGGAGGAGCGCAGGAGGAAAAAGTCCTCTTTCAGGAGAAGCTGACGCGAGAACTGTTTGAGGAGCTGAATGCAGATCTCTTCCAGAAGATTCTGGCACCCATTGAGACCGTCCTCGTAGAGGGCCATCTAGAGAAAGAAGAAGTGGATGAGATTGTCCTGGTGGGAGGGTCTACGAGGATCCCCCGCATTAGACAGCTCATTAGTCAGTACTTTGGAAAGGAACCAAACACCTCGGTGGACCCCGACCTGGCCGTGGTGACCGGGGTAGCCATTCAAGCAGGCATCATGGGCGGCTCTTGGCCTCTCCAGGTCAGCGCAATTGAGATTCCCAACAGGCACCTTCGTAAGACCAACTTCAGCTGATTGGTCGAGACTTAAACTGCTACTCGGGCATTTGTCACGCGACTGCTATGTGCCAACACACCAAAAACTGGTTAAACAATGTGTGTGTTACATGTTTTTGCTTCCTGATTGAGCCAAAACAATGGTTACTGGAGCATTTGTACTTAACGTCTGGACTTGTCGGCCCAAAGTAAAATTTCTACATTTCTCTTAGCATTGAGAGAATGTTTACCCGTTATCTCGAGCAAGTGTCTGCTCGGGACCATATTACTTCATTTATTGCCATCTGTGTGCCTAACTGGTACTAACTGTGCAATAAGTCTTTGACTGGTTTTGGCAGGTTTAATGATGTTGTATTCAGGGAAGCAGCTAATATATAACTTAATCATTCCAGTCtcagctatttatttatttattttgccaagGCTAGTTGTGATTTCAGCTAGCTGTATATGTCTACTGGAGTTTTGCTTGTGCCTTTTCAATCATTGCCACAATTAAAACATGTACCGTAGACTAagaatagtttttatttgcttactttttgttagtttttcccCCGCATATAGTTAAGTATTAGTAAACCATAATGCAACCTGCCAGTGGttaaataccattttaaatGTACCAGCATGACCAATGTGGTATTTAGTTCATTACCTCTTCACACTGAAGCTTTTATAAGAAtgtgaatgaaatatatataaatgtttacatatatttttttgtttaagttcacatattaaaaaaaaagtataattaccCACATGGACCCTCCTAAAAAAATGATGCTTTGTGTTGacctgttttgtttatataatgctAAAAGCTCAATGTTAGGTGAAAATGCTTTGTGcaaagtgtaaatatatattgtttaatgcACTTTACATACAGAATATTGCACAAAGTCAAAAGGGaaaacaattatacatttatcaGTGTATGCACATTCAAAACTTTACTgtaactgaaaaacaaaacattgaagTCTATTTTTGTACAGTTCTGTACCATTTCCATTTGTTGCATTATGCACAGaacctgtgtgtgtgattaaagTCCTTTAACTTTTGCTACCgcgcaaagaaaaacaaa

Function

symbol description
hspa13 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Predicted to be involved in cellular response to unfolded protein; chaperone cofactor-dependent protein refolding; and protein refolding. Predicted to be located in endoplasmic reticulum. Predicted to be active in mitochondrion. Is expressed in liver and post-vent region. Orthologous to human HSPA13 (heat shock protein family A (Hsp70) member 13).

NR:

description
heat shock 70 kDa protein 13-like

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K09491 STCH; stress 70 protein chaperone microsome-associated 60kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258437.1 True 2502 mRNA 0.44 5 16043268 16047351

Neighbor

gene id symbol gene type direction distance location
serpinh1b serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107682478,LOC107589735 coding downstream 41104 15998101 ~ 16002164 (-)
tsku tsku,LOC107666203,LOC107682449,LOC107589732,LOC107587631,LOC107714182 coding downstream 60366 15977171 ~ 15982902 (-)
si:dkey-52l18.4 LOC107666186,LOC107588402,LOC107714160 coding downstream 66210 15969354 ~ 15977058 (-)
zgc:162698 LOC107669731,LOC107714191,LOC107756677,LOC107682388 coding downstream 154675 15878587 ~ 15888593 (-)
dharma LOC107714161,LOC107548561,LOC107669726 coding downstream 203830 15838298 ~ 15839438 (-)
samsn1a LOC107714174,LOC107682540,LOC107589736,LOC107588143,LOC107756545 coding upstream 1813 16049164 ~ 16059722 (-)
LOC122358647 wscd1,LOC107756514,LOC107682602,LOC107666180,LOC108432998,LOC107714157 coding upstream 269291 16316642 ~ 16336752 (-)
akap1b akap1b,LOC107587463,LOC107746655,LOC107592918,LOC107672073,LOC107683393 coding upstream 723151 16770502 ~ 16783868 (-)
LOC122358464 NA coding upstream 796376 16843727 ~ 16847030 (-)
LOC122358967 LOC107672075 coding upstream 802096 16849447 ~ 16854802 (-)
G107090 NA non-coding downstream 212087 15828688 ~ 15831181 (-)
G107073 LOC107756729,LOC107589721,LOC107685095,LOC107548592 non-coding downstream 382336 15660060 ~ 15660932 (-)
G107055 nova2,LOC107669728,LOC107589717,LOC103039352,LOC107685091,LOC107548550 non-coding downstream 390458 15532081 ~ 15652810 (-)
LOC122359369 NA non-coding downstream 424663 15616118 ~ 15618605 (-)
G107053 NA non-coding downstream 566787 15474460 ~ 15476481 (-)
G107205 NA non-coding upstream 24541 16071892 ~ 16072101 (-)
G107208 LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 non-coding upstream 68196 16115547 ~ 16120552 (-)
LOC122358383 NA non-coding upstream 94646 16141997 ~ 16148738 (-)
G107217 NA non-coding upstream 117090 16164441 ~ 16284176 (-)
G107429 NA non-coding upstream 1028279 17075630 ~ 17075857 (-)
xaf1 LOC107714184,LOC107578343 other downstream 132794 15907362 ~ 15910474 (-)
G107064 eml2,LOC107669753,LOC107548590,LOC107743713,LOC107685092 other downstream 261257 15776508 ~ 15782011 (-)
LOC122359058 dph1,LOC107585615,LOC107664954,LOC107685060 other downstream 1720829 14298251 ~ 14322439 (-)
mmp20a NA other downstream 2033982 14003741 ~ 14009286 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other downstream 2117541 13908806 ~ 13925727 (-)
LOC122359003 LOC107714165,LOC107588126 other upstream 365285 16412636 ~ 16426414 (-)
msi2b msi2b,msi2,LOC108425902,LOC107682662,LOC108435815,LOC108277875,LOC107587484,LOC105028669,LOC106603292 other upstream 503840 16551191 ~ 16762064 (-)
nf1a nf1,nf1a,LOC107682681,LOC107672107 other upstream 737674 16785025 ~ 16841738 (-)
LOC122358654 msi2b,LOC108425902,LOC107587484,LOC107666187,LOC107682662,LOC107756385,LOC107592958 other upstream 1016057 17063408 ~ 17075480 (-)
LOC122359261 msi1,LOC107712472,LOC107550984,LOC105899087,LOC107687968,LOC107753116 other upstream 1039308 17086659 ~ 17101997 (-)

Expression


Co-expression Network