LOC122360855


Basic Information

Item Value
gene id LOC122360855
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18752790 ~ 18756397 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261702.1
ATGATCGCGAATAACATCACCGACATTGGAGATTTTGTTCCCTCGGACCCTGAGGTGATCATCGTAGGGGCCGGTGTTCTGGGCTCCTCGCTGTCAGCGGTTCTTGGGCGAGATGGACGAAAGGTTACAGTGATTGAGAGGAGTCTTAGAGAGCCTGACAGAATAGTGGGTGAATTGCTGCAGCCTGGTGGATATCGTGCCCTCAAAGAACTAAACCTGGAAAAGTCAGTTGAAGGGCTGGATGCATGCACTGTGAATGGGTACATCATTCATGATACTGAAAGTGGGATGGCTGTGGAGATTCCTTACTCTCAAGACCAGGCTCAGTGCGGCCGAGCTTTCCACCATGGTCGCTTTATCATGGGTCTGCGAAGAGCTGCTTTAGCAGAGCCAAATGTGAGGGTTATTGAAGGCACAGTAACGAACCTTGAAGAGGAAAATGGCTGTGTCACAGGCGTCCAATACAAGGACAAACATTCTGGGAAAATACAGAGATTACAAGCTCCTTTAACAGTGGTGGCAGATGgatgtttttcaaaattcaGACAAAGTTTGGGCTCTGAAAGTGTTCAGATCTGTTCCAACTTCGTAGGCTGCATAATGAAGAACTCTCCTCAGTACAAACCCAACTACGCTGAGCTGGTTCTGAGCTGCCATGGGCCGGTTCTGATCTACCGGATCTCCTCCACCGACACGCGTGTTCTGGTGGACATACAGGGACGTCTGCCGAAAAACCTGAGCCAATACATGACTGACAAGATCCACCCACAACTGCCAGATCACTTAAAGAGGCCGTTTTTGTTGGCTGTACAAAATAATCGTCTGAAATCCATGCCAGCAAGTTTCCTGACCTCATCTCCTGTTAATAAACCAGGAGTTTTGCTTCTTGGAGATGCTTATAACATGAGGCATCCTTTAACTGGCGGAGGGATGAGCGTAGCGCTCAATGATGTCAGGATTTGGAGAAGTCTGCTTCAGAATATTCCGGATCTCTCTGACAATTCAGCCTTGTTGCAGGCTAAAAAGAAATTCCACTGGGAGCGGAAGGCGTCTCATTCGTTTGTGGTGGATGTCCTCGCACAGGCTCTGCATGAATTGTTTGCTTCACAAGACGATTCGATAATAGATCTTAGGAGAGCCTGCTTGGGTTATTTTCATCTGGGAGGGGAGTGTGTCTCTGGACCAGTTCGACTGCTTTCTGTGCTGAAACCCCGTCCCGTGACACTGATTGGTCACTTCTTTGGCGTTGTATTGTATGCGGTGTACTTAAAAGTCAAGACAGAGGTAAGACAGGATCAAGCAGGAGCGCTGCTGAGGAGCATGAGGATTCTTTATCGTGCATGTGCAGTCATATTCCCTCTCatattttctgaatttaaatacCTCTTTTATGGATTTAGGCCTTTGCAGTAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004506 squalene monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K00511 SQLE, ERG1; squalene monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261702.1 True 1413 mRNA 0.47 11 18752790 18756397

Neighbor

gene id symbol gene type direction distance location
LOC122360727 LOC107587797,LOC107714594,LOC107704906 coding downstream 90300 18653732 ~ 18662490 (-)
phf20l1 LOC107704904,LOC107587800,LOC107671837,LOC107724788 coding downstream 109501 18633238 ~ 18643289 (-)
tg tg,LOC107714614,LOC107672160,LOC107724770,LOC107552797,LOC107704832 coding downstream 119875 18601810 ~ 18632915 (-)
ccn4b wisp1b,LOC107714595,LOC107587903,LOC107552812,LOC107704854,LOC107724778,LOC107672150 coding downstream 152526 18596956 ~ 18600264 (-)
ptp4a3b ptp4a3,LOC107587801,LOC107714615,LOC107552859,LOC107704902,LOC107724783,LOC107671807,LOC103029087,LOC108436585 coding downstream 163088 18566051 ~ 18589702 (-)
rpz5 NA coding upstream 24602 18780999 ~ 18782095 (-)
LOC122360857 NA coding upstream 40864 18797261 ~ 18798074 (-)
nr2f5 nr2f5,LOC107592459,LOC107592141,LOC107726692,LOC107671473,LOC103038004,LOC108433883,LOC108256176,LOC105891836,LOC105005680,LOC100380645 coding upstream 89347 18845744 ~ 18859744 (-)
bola1 bola1,LOC107592543,LOC107671409 coding upstream 125430 18881827 ~ 18883697 (-)
sv2a sv2a,LOC107592458,LOC107688240 coding upstream 128156 18884553 ~ 18916456 (-)
G114259 LOC107666800,LOC107719142,LOC107592439 non-coding downstream 11961 18739754 ~ 18740829 (-)
LOC122360941 LOC107600493,LOC107719147,LOC107592185,LOC107685964,LOC107666785 non-coding downstream 64395 18687166 ~ 18688395 (-)
G114231 NA non-coding downstream 203851 18548188 ~ 18548939 (-)
LOC122360486 NA non-coding downstream 208110 18528871 ~ 18544680 (-)
G114075 NA non-coding downstream 377176 18373968 ~ 18375614 (-)
LOC122360016 apoa2,LOC107688286,LOC107728486 non-coding upstream 229006 18985403 ~ 18987926 (-)
G114399 NA non-coding upstream 236465 18992862 ~ 19063171 (-)
G114401 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 non-coding upstream 256258 19012655 ~ 19041766 (-)
G114430 NA non-coding upstream 449722 19206119 ~ 19262830 (-)
G114458 NA non-coding upstream 524031 19280428 ~ 19283527 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 54383 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 81516 18669607 ~ 18671274 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other downstream 102181 18649519 ~ 18650609 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other downstream 232503 18492626 ~ 18520287 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other downstream 385517 18357417 ~ 18367273 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other upstream 55841 18812238 ~ 18821110 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other upstream 660565 19416962 ~ 19421094 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other upstream 840035 19596432 ~ 19657724 (-)
G114715 NA other upstream 1410398 20166795 ~ 20177758 (-)
G114793 NA other upstream 1685568 20441965 ~ 20452450 (-)

Expression


Co-expression Network