CI01000001_01668334_01670035 (CAMK2N1B)


Basic Information

Item Value
gene id CI01000001_01668334_01670035
gene name CAMK2N1B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1667762 ~ 1671167 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01668334_01670035.mRNA
TTATATAATGTGATTAGTTTTTAGGGTGATTTAACATTCTGTCAAGGGTTTACAGATGGGAAAAAAAGACGTTTTGGCTAATTCTGGCACATTTACAGCTATGTTCATTAATGTTAAAACTCATATCTTTCACCAAGAATAAGACAAGCTTTTGGGTGGCAATGATGTTCAACTCTAGTGGGATTCAAACCCACATACTTTTGGACATCTTTAACCACTAAACCACAGCACCCAAATGCTGCAGGCAGCAGTGTGCGGGTGGAGGGAGGGGGATGGATCTTCGCGTGCAGCCGGAGCATTGAGTCTGAGTGACGTCTCTCTGCTCTCTGAGGATCCGTGTGTTTTTGCATCGCGCTCCTGTTTTGCATCTACATCAGTTTTTCCAAATGACTTCTGCTCATCGCCTGTAAGTAACGAGAGGAAAACTGAAAGTGACTCCCATAGTATGAAGGTAAAATAAAGCGGAATCGTATCGTGACAGTTTAGATTCTCGCGCGCCGTTCGCTTACAGAGCCCTCGCTCGTTAGTTATCGATTGTCTTATTATCCCGATCGATTATTGTGAACGGAATCATGTCAGAAGTGCTGCCTTACGAAGAGAACATCTCTCCTTACGGTGATGATGGAGATGAAGAGCAGATATCCCTCACCTGTCGCCTGCAGAACAACAGCAGTAACTTCTTCAGTTCTGCGCAGAACAAACGAGCTCCGAAACTCGGACAGATCGGACGCAGTAAGAGAGTTGTCATAGAAGATGACAGAATTGATGAAGTTCTGAACAACACAGCAGAGAAGTCATCGGCGGGAGTGTAACGCTCAAGGACGATGTTAAAGCGGCAGGAAATCGTGGGTTACGTGCATTCTGCATCAAAAGCACTTTGCAGTCCCTCTTAATATGGGTTGAATTTCACGGTGCAGCAGCAGGCGAGGAGAGAGTCCCTGCTGCGGGCATCCAAACAGAGGAAGCGGGGCTCTATCTGCTTTCTCTCTTTAAGGGCATGTTTCATATCCCTTCTTATAAAGTGACATCTTACACTGGACATACAAGTCCTATGTTGTTTAAAATACATGTGGAGTTGGTCTGTAGTGGTCCAGATTCAGTTTATATTGTGAGAGGAATGCATTGATATCAATCACAAGCACAAATATGACAACATTCGTTCATTATTTTGCCGTGAGACTGAGCACTTGTTTTCTCCGAATCTTTTTGTGCACAATGAAACTTTAAATATCCTAATTATGATCTCCTGGATACATTTCGTGTTCTTTTGCAGAGATGACGGACTGAGAAAATGTTTTTTTTATAGGATGAGAAAGGAAAGACTACTTTTTTAAAGCAATTTTTTCATGTTGCATATTGTAATTTTTTTTGATGTGGCTGCAAACTGCCTGCTTAGCCTGAGTTCAAAAGCTTATTTTTATATCAAGGAGTTATTTCTGAAGAGAAAAAAAATGCTTATTTGGGTAATAGTCGTAGCACTTTCAAACGTGGTTGTCAGCTAAATGGATTTTGATCAATTTTGTGCCAAAAGTTTGCAAAATATGCCAGTCGACTTGTGTTCCCGTTTACCTGAGTAATGTGAAGTTTTCCAGGCCTGGCTCTCATATATGTTTCAGGGCTTTTCTAACTGCTTTTTCTTTTTTTGCATGAGACAGGCACAAACGCCTCCTGTGGCAGTGAATTACTATTATATTTACAGTAATGTTACTTTGAATGACGAACCTCAGACTCTTGAATATTGTGTATGTTGCACTTCTCTATAATGTTACACAGGGCTATATTTGCAATGAAATGTATGACCA
>TU15115
GTGGAGGGAGGGGGATGGATCTTCGCGTGCAGCCGGAGCATTGAGTCTGAGTGACGTCTCTCTGCTCTCTGAGGATCCGTGTGTTTTTGCATCGCGCTCCTGTTTTGCATCTACATCAGTTTTTCCAAATGACTTCTGCTCATCGCCTGTAAGTAACGAGAGGAAAACTGAAAGTGACTCCCATAGTATGAAGGTAAAATAAAGCGGAATCGTATCGTGACAGTTTAGATTCTCGCGCGCCGTTCGCTTACAGAGCCCTCGCTCGTTAGTTATCGATTGTCTTATTATCCCGATCGATTATTGTGAACGGAATCATGTCAGAAGTGCTGCCTTACGAAGAGAACATCTCTCCTTACGGTGATGATGGAGATGAAGAGCAGATATCCCTCACCTGTCGCCTGCAGAACAACAGCAGTAACTTCTTCAGTTCTGCGCAGAACAAACGAGCTCCGAAACTCGGACAGATCGGACGCAGTAAGAGAGTTGTCATAGAAGATGACAGAATTGATGAAGTTCTGAACAACACAGCAGAGAAGTCATCGGCGGGAGTGTAACGCTCAAGGACGATGTTAAAGCGGCAGGAAATCGTGGGTTACGTGCATTCTGCATCAAAAGCACTTTGCAGTCCCTCTTAATATGGGTTGAATTTCACGGTGCAGCAGCAGGCGAGGAGAGAGTCCCTGCTGCGGGCATCCAAACAGAGGAAGCGGGGCTCTATCTGCTTTCTCTCTTTAAGGGCATGTTTCATATCCCTTCTTATAAAGTGACATCTTACACTGGACATACAAGTCCTATGTTGTTTAAAATACATGTGGAGTTGGTCTGTAGTGGTCCAGATTCAGTTTATATTGTGAGAGGAATGCATTGATATCAATCACAAGCACAAATATGACAACATTCGTTCATTATTTTGCCGTGAGACTGAGCACTTGTTTTCTCCGAATCTTTTTGTGCACAATGAAACTTTAAATATCCTAATTATGATCTCCTGGATACATTTCGTGTTCTTTTGCAGAGATGACGGACTGAGAAAATGTTTTTTTTATAGGATGAGAAAGGAAAGACTACTTTTTTAAAGCAATTTTTTCATGTTGCATATTGTAATTTTTTTTGATGTGGCTGCAAACTGCCTGCTTAGCCTGAGTTCAAAAGCTTATTTTTATATCAAGGAGTTATTTCTGAAGAGAAAAAAAATGCTTATTTGGGTAATAGTCGTAGCACTTTCAAACGTGGTTGTCAGCTAAATGGATTTTGATCAATTTTGTGCCAAAAGTTTGCAAAATATGCCAGTCGACTTGTGTTCCCGTTTACCTGAGTAATGTGAAGTTTTCCAGGCCTGGCTCTCATATATGTTTCAGGGCTTTTCTAACTGCTTTTTCTTTTTTTGCATGAGACAGGCACAAACGCCTCCTGTGGCAGTGAATTACTATTATATTTACAGTAATGTTACTTTGAATGACGAACCTCAGACTCTTGAATATTGTGTATGTTGCACTTCTCTATAATGTTACACAGGGCTATATTTGCAATGAAATGTATGACCAATAAAATGTGATTACATAACTGAACTCTTAAACCCTCACTGTACGCTATGTGAAGTTTCTTTTCTTTGCTGTTTTATCAAATGTAAGGTGACACTTTTCTAAAACAAATGCTTTCCAATTAAAACAGGCCTGTTCGGATATA
>TU15116
GTGGAGGGAGGGGGATGGATCTTCGCGTGCAGCCGGAGCATTGAGTCTGAGTGACGTCTCTCTGCTCTCTGAGGATCCGTGTGTTTTTGCATCGCGCTCCTGTTTTGCATCTACATCAGTTTTTCCAAATGACTTCTGCTCATCGCCTGTAAGTAACGAGAGGAAAACTGAAAGTGACTCCCATAGTATGAAGGTAAAATAAAGCGGAATCGTATCGTGACAGTTTAGATTCTCGCGCGCCGTTCGCTTACAGAGCCCTCGCTCGTTAGTTATCGATTGTCTTATTATCCCGATCGATTATTGTGAACGGAATCATGTCAGAAGTGCTGCCTTACGAAGAGAACATCTCTCCTTACGGTGATGATGGAGATGAAGAGCAGATATCCCTCACCTGTCGCCTGCAGAACAACAGCAGTAACTTCTTCAGTTCTGCGCAGAACAAACGAGCTCCGAAACTCGGACAGATCGGACGCAGTAAGAGAGTTGTCATAGAAGATGACAGAATTGATGAAGTTCTGAACAACACAGCAGAGAAGTCATCGGCGGGAGTGTAACGCTCAAGGACGATGTTAAAGCGGCAGGAAATCGTGGGTTACGTGCATTCTGCATCAAAAGCACTTTGCAGTCCCTCTTAATATGGGTTGAATTTCACGGTGCAGCAGCAGGCGAGGAGAGAGTCCCTGCTGCGGGCATCCAAACAGAGGAAGCGGGGCTCTATCTGCTTTCTCTCTTTAAGGGCATGTTTCATATCCCTTCTTATAAAGTGACATCTTACACTGGACATACAAGTCCTATGTTGTTTAAAATACATGTGGAGTTGGTCTGTAGTGGTCCAGATTCAGTTTATATTGTGAGAGGAATGCATTGATATCAATCACAAGCACAAATATGACAACATTCGTTCATTATTTTGCCGTGAGACTGAGCACTTGTTTTCTCCGAATCTTTTTGTGCACAATGAAACTTTAAATATCCTAATTATGATCTCCTGGATACATTTCGTGTTCTTTTGCAGAGATGACGGACTGAGAAAATGTTTTTTTTATAGGATGAGAAAGGAAAGACTACTTTTTTAAAGCAATTTTTTCATGTTGCATATTGTAATTTTTTTTGATGTGGCTGCAAACTGCCTGCTTAGCCTGAGTTCAAAAGCTTATTTTTATATCAAGGAGTTATTTCTGAAGAGAAAAAAAATGCTTATTTGGGTAATAGTCGTAGCACTTTCAAACGTGGTTGTCAGCTAAATGGATTTTGATCAATTTTGTGCCAAAAGTTTGCAAAATATGCCAGTCGACTTGTGTTCCCGTTTACCTGAGTAATGTGAAGTTTTCCAGGCCTGGCTCTCATATATGTTTCAGGGCTTTTCTAACTGCTTTTTCTTTTTTTGCATGAGACAGGCACAAACGCCTCCTGTGGCAGTGAATTACTATTATATTTACAGTAATGTTACTTTGAATGACGAACCTCAGACTCTTGAATATTGTGTATGTTGCACTTCTCTATAATGTTACACAGGGCTATAT

Function

symbol description
camk2n1b Human ortholog(s) of this gene implicated in ovarian cancer; ovarian carcinoma; and prostate adenocarcinoma. Orthologous to human CAMK2N1 (calcium/calmodulin dependent protein kinase II inhibitor 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01668334_01670035.mRNA False 1802 mRNA 0.41 2 1667762 1671025
TU15115 False 1686 lncRNA 0.41 2 1668020 1671167
TU15116 True 1523 TUCP 0.42 2 1668020 1671004

Neighbor

gene id symbol gene type direction distance location
CI01000001_01656726_01659321 MUL1B, MUL1 coding upstream 8332 1656057 ~ 1659430 (+)
CI01000001_01589727_01595957 NA coding upstream 71473 1589727 ~ 1596289 (+)
CI01000001_01545235_01551987 DNAJC16 coding upstream 115739 1545235 ~ 1552023 (+)
CI01000001_01538233_01543680 NA coding upstream 123924 1538071 ~ 1543838 (+)
CI01000001_01530818_01536092 NA coding upstream 131527 1529799 ~ 1536235 (+)
CI01000001_01748436_01754956 DDX19A, DDX19B, RP11-529K1.3 coding downstream 77313 1748338 ~ 1754956 (+)
CI01000001_01762809_01771029 CPSF3L coding downstream 91784 1762809 ~ 1771029 (+)
CI01000001_01833609_01860272 CENB5, ACAP3 coding downstream 162236 1833261 ~ 1860953 (+)
CI01000001_01868471_01873459 UBE2J2, UBE2J2.L coding downstream 197446 1868471 ~ 1873519 (+)
CI01000001_01878297_01894123 HIPK1A coding downstream 207272 1878297 ~ 1896084 (+)
G13570 NA non-coding upstream 3270 1664265 ~ 1664492 (+)
G13448 NA non-coding upstream 102205 1560388 ~ 1565557 (+)
G13493 NA non-coding upstream 251110 1416412 ~ 1416652 (+)
G13492 NA non-coding upstream 256691 1410678 ~ 1411071 (+)
G13442 NA non-coding upstream 289739 1302726 ~ 1378023 (+)
G13574 NA non-coding downstream 11739 1682764 ~ 1683123 (+)
G13697 NA non-coding downstream 31959 1702984 ~ 1704437 (+)
G13761 NA non-coding downstream 107360 1778385 ~ 1778757 (+)
G13763 NA non-coding downstream 109131 1780156 ~ 1780359 (+)
G13778 NA non-coding downstream 231246 1902271 ~ 1907118 (+)
G13051 NA other upstream 622610 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1175705 483853 ~ 488825 (+)
G12614 NA other upstream 1356821 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 1945223 3618075 ~ 3621451 (+)
G15794 NA other downstream 3390193 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3615724 5279837 ~ 5287698 (+)
G15995 NA other downstream 4040860 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 5861547 7531541 ~ 7540586 (+)

Expression


Co-expression Network