G13442


Basic Information

Item Value
gene id G13442
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1302726 ~ 1378023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU14972
TCTTTTTTTTTTTTTTTTTTTTTATCCGAAGTACAGTTTATTTTTCCTTTTATATATGAGAAAATAAATTACATTATTCAAATAAACATTCAGGTAACAGGAAAGACACCCTTGAATTGTAAAATACTTGGCTGTGATATTATTGGCTGATATTATTTTTCACAGACCACAGAGCCTTGGTTACATCATCATAAAAGAAAAGATATTTCAGAGGCAGAGAAAATCATTACATCTTTACATAAACATAATTATGATTACATAATACATTAACACAATATGAAAATAGGGTATTTTTGGTACATTCTCACGCAGCCGTAAATTGTGGTTCTGACTTTTAAGTTTTGTAAGGTGAAGATAAGGCAAAGAAATGCTGAAGTTGGTCTCTATTCAAGATGGAACTTAAACATACACTATGTAACTTTTTTTTCCCCCCAAAATTAACAAAATTTAAACAATGGGTCAATACATCAATCCTTCCAAAACGTGTTTTTGTCTTACCCTGATTCAGTATGGTAAGCCTATTATAAGTGTTTATATTTTAGACCTGTCGGGAAATCGCGTACATCCGTCACTCGCTATTTATCTATAAATAGAGAAAAGTTCCTCTGGCTACTTTGACGTGTGTACGGTGTGTGAGTGGCATTGGTTAGTTGCCACAATGAGCGAGAAAGGTTGACATGGAGCAGTTAAATCTCAAACCTCCAGAGAATCACCCGTTTTAAACAAACACTGAACAGAGGAGAGTCTGCTGGCAAAAAGAGAAAGTGACACTTTTATCTCTTAAGCCCTTTAAGTGAATGTATGATAACCATATTCATCCGCACAGTCACGCAGAGCCAAAGCACAACCAAAACAATGTTCTTCCGCAAAATGCATGCAGTTTTTTTTTAACCACTAGAGTTACATAGTGTGCCTAGCTAAGCTAATTATTAAGCTGAATTGTGAATATAATTACATCATACTATTTGTGCGAAAAGAAAAAAGCAGCAAAGAAAACAAGTGCGTTTTCATCCGTAAACTATCCAATTGGCACTAAAGCAAGACTGAAGATGTTTGGACTTCACACAGTCTACCGTGAGAACTTTCTAGGCCTAAACGCAGGCAGCATGAGCTGATGAGCAACAGTCCTCTCCTCCGGTACCGGCGCAAGATCCTCCGCTGAACCCCACTTCTTCATGGAGTGAAATAATGACGTGATCTTTCTGTTCCTGCGCTCTCCGGCCTGGGTTAGACTTTGGCACTCGCTGACTTCAGCTTGAGGAACAAAC
>TU14973
TCTTTTTTTTTTTTTTTTATCCGAAGTACAGTTTATTTTTCCTTTTATATATGAGAAAATAAATTACATTATTCAAATAAACATTCAGGTAACAGGAAAGACACCCTTGAATTGTAAAATACTTGGCTGTGATATTATTGGCTGATATTATTTTTCACAGACCACAGAGCCTTGGTTACATCATCATAAAAGAAAAGATATTTCAGAGGCAGAGAAAATCATTACATCTTTACATAAACATAATTATGATTACATAATACATTAACACAATATGAAAATAGGGTATTTTTGGTACATTCTCACGCAGCCGTAAATTGTGGTTCTGACTTTTAAGTTTTGTAAGGTGAAGATAAGGCAAAGAAATGCTGAAGTTGGTCTCTATTCAAGATGGAACTTAAACATACACTATGTAACTTTTTTTTCCCCCCAAAATTAACAAAATTTAAACAATGGGTCAATACATCAATCCTTCCAAAACGTGTTTTTGTCTTACCCTGATTCAGTATGGTAAGCCTATTATAAGTGTTTATATTTTAGACCTGTCGGGAAATCGCGTACATCCGTCACTCGCTATTTATCTATAAATAGAGAAAAGTTCCTCTGGCTACTTTGACGTGTGTACGGTGTGTGAGTGGCATTGGTTAGTTGCCACAATGAGCGAGAAAGGTTGACATGGAGCAGTTAAATCTCAAACCTCCAGAGAATCACCCGTTTTAAACAAACACTGAACAGAGGAGAGTCTGCTGGCAAAAAGAGAAAGTGACACTTTTATCTCTTAAGCCCTTTAAGTGAATGTATGATAACCATATTCATCCGCACAGTCACGCAGAGCCAAAGCACAACCAAAACAATGTTCTTCCGCAAAATGCATGCAGTTTTTTTTTAACCACTAGAGTTACATAGTGTGCCTAGCTAAGCTAATTATTAAGCTGAATTGTGAATATAATTACATCATACTATTTGTGCGAAAAGAAAAAAGCAGCAAAGAAAACAAGTGCGTTTTCATCCGTAAACTATCCAATTGGCACTAAAGCAAGACTGAAGATGTTTGGACTTCACACAGTCTACCGTGAGAACTTTCTAGGCCTAAACGCAGGCAGCATGAGCTGATGAGCAACAGTCCTCTCCTCCGGTACCGGCGCAAGATCCTCCGCTGAACCCCACTTCTTCATGGAGTGAAATAATGACGTGATCTTTCTGTTCCTGCGCTCTCCGGCCTGGGTTAGACTTTGGCACTCGCTGACTTCAGCTTGAGGAACAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14972 False 1268 lncRNA 0.37 2 1302726 1378023
TU14973 True 1263 lncRNA 0.37 2 1302726 1378023

Neighbor

gene id symbol gene type direction distance location
CI01000001_01248946_01251200 NA coding upstream 50630 1248946 ~ 1252096 (+)
CI01000001_01209204_01212045 PFDN4 coding upstream 90474 1209204 ~ 1212252 (+)
CI01000001_01168378_01169553 NA coding upstream 133084 1167517 ~ 1169642 (+)
CI01000001_01088316_01091350 TSHZ2 coding upstream 211148 1088316 ~ 1091578 (+)
CI01000001_00483853_00488761 VWA1 coding upstream 813901 483853 ~ 488825 (+)
CI01000001_01504275_01507238 NA coding downstream 126252 1504275 ~ 1507494 (+)
CI01000001_01511371_01514291 NA coding downstream 133348 1511371 ~ 1514687 (+)
CI01000001_01517517_01521698 NA coding downstream 139159 1517182 ~ 1522043 (+)
CI01000001_01527865_01529016 NA coding downstream 149653 1527676 ~ 1529095 (+)
CI01000001_01530818_01536092 NA coding downstream 151776 1529799 ~ 1536235 (+)
G13435 NA non-coding upstream 14226 1286954 ~ 1288500 (+)
G13434 NA non-coding upstream 15996 1286317 ~ 1286730 (+)
G13191 NA non-coding upstream 97652 1204163 ~ 1205074 (+)
G13188 NA non-coding upstream 101934 1197856 ~ 1200792 (+)
G13190 NA non-coding upstream 105905 1193304 ~ 1196821 (+)
G13492 NA non-coding downstream 32655 1410678 ~ 1411071 (+)
G13493 NA non-coding downstream 38389 1416412 ~ 1416652 (+)
G13448 NA non-coding downstream 182365 1560388 ~ 1565557 (+)
G13570 NA non-coding downstream 286242 1664265 ~ 1664492 (+)
CI01000001_01668334_01670035 CAMK2N1B non-coding downstream 289997 1667762 ~ 1671167 (+)
G13051 NA other upstream 257574 1043713 ~ 1045152 (+)
G12614 NA other upstream 991785 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 2238225 3618075 ~ 3621451 (+)
G15794 NA other downstream 3683195 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3908726 5279837 ~ 5287698 (+)
G15995 NA other downstream 4333862 5711885 ~ 5714951 (+)

Expression


Co-expression Network