G13191


Basic Information

Item Value
gene id G13191
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1204163 ~ 1205074 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU14688
TAATAATCAAAAATTAAATTTACCTTCTGCCGTTTTTTCTGAGTTGATTGCTCGTTCCCCATCTTCACTTCAAGTCAGCAACTTTCCACTGTCTTGTGCCCCAAACTGAAAATTAAGAGTCTGTGTACAGTTTCCAAACCTCGATTACAGTAATCACCAGCGGTCTGCTATCTGTCAAGCCTGTGTGTGTACACATATACCTGTCCTAAGAGAGGGTGGGGCTCAAAACTTATTACCTCAAGACACTGTGGATGAGACATGGCCTGTGAACCCATTCGCACTGATGAACTCAGCATCATGTCCTTTTGTTTCTCACTGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU14688 True 320 lncRNA 0.43 2 1204163 1205074

Neighbor

gene id symbol gene type direction distance location
CI01000001_01168378_01169553 NA coding upstream 34521 1167517 ~ 1169642 (+)
CI01000001_01088316_01091350 TSHZ2 coding upstream 112585 1088316 ~ 1091578 (+)
CI01000001_00483853_00488761 VWA1 coding upstream 715338 483853 ~ 488825 (+)
CI01000001_00440891_00444667 HTR6 coding upstream 759180 440891 ~ 444983 (+)
CI01000001_00436821_00439097 NA coding upstream 764433 436731 ~ 439752 (+)
CI01000001_01209204_01212045 PFDN4 coding downstream 4130 1209204 ~ 1212252 (+)
CI01000001_01248946_01251200 NA coding downstream 43872 1248946 ~ 1252096 (+)
CI01000001_01357469_01365104 NA coding downstream 152193 1357267 ~ 1365576 (+)
CI01000001_01504275_01507238 NA coding downstream 299201 1504275 ~ 1507494 (+)
CI01000001_01511371_01514291 NA coding downstream 306297 1511371 ~ 1514687 (+)
G13188 NA non-coding upstream 3371 1197856 ~ 1200792 (+)
G13190 NA non-coding upstream 7342 1193304 ~ 1196821 (+)
G13187 NA non-coding upstream 18436 1185452 ~ 1185727 (+)
G13180 NA non-coding upstream 27115 1176644 ~ 1177048 (+)
G13167 NA non-coding upstream 59190 1144750 ~ 1144973 (+)
G13434 NA non-coding downstream 81243 1286317 ~ 1286730 (+)
G13435 NA non-coding downstream 81880 1286954 ~ 1288500 (+)
G13442 NA non-coding downstream 97652 1302726 ~ 1378023 (+)
G13492 NA non-coding downstream 205604 1410678 ~ 1411071 (+)
G13493 NA non-coding downstream 211338 1416412 ~ 1416652 (+)
G13051 NA other upstream 159011 1043713 ~ 1045152 (+)
G12614 NA other upstream 893222 309144 ~ 310941 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 462946 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 2411174 3618075 ~ 3621451 (+)
G15794 NA other downstream 3856144 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 4081675 5279837 ~ 5287698 (+)
G15995 NA other downstream 4506811 5711885 ~ 5714951 (+)

Expression


Co-expression Network