CI01000001_02166796_02171151 (CBX5)


Basic Information

Item Value
gene id CI01000001_02166796_02171151
gene name CBX5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2166796 ~ 2172179 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02166796_02171151.mRNA
ATGGGAAAGAAGAACCAGAACCGTGAAGATGATGAGGCTGCTTCCTCAGATGAGGAAGAGTATGTAGTGGAGAAGGTTTTGGACAGGAGAGTTGTGAAGGGCCGTGTGGAATATTTCCTCAAGTGGAAAGGCTTTACAGACAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCGCAGAGTTCATGAAGACCTATAAAAAGGGAAGCAGTGGAAGCACACCCAGCAGCAAGCCCTCCAGCACAGGCTCTTCTTCGGCCCGTCCCAAAGACAGTAGCGGCAGCAGCAGCACAAGCAAGAGGAAAAACTCAGAAGAAGAGAACGGGAGTGGCAGCAAACCCAAAAAGAAAAAGGAGGATGAGATTCTTGTAGCAAGAGGGTTTGAGCGAGGCCTGGAGCCTGAGAAGATTATTGGAGCAACAGACTCTTGTGGAGACCTTATGTTCCTTATGAAGTGGAAGGACTCTGATGAGGCAGACCTTGTGCTTGCAAAGGAAGCCAATCACAAGTGCCCACAGATCGTCATTGCCTTCTACGAGGAGCGTCTGACCTGGCATGAAGACGGCGATAAGAAGGAAAAGAGTGCCACGGCAGTTTAAATGGCATAAGGGGGAGGAAAGACAGAGTCCTCCAAACCTTGTGCCCTTTGTCGCACCGGTGACACTCTCATAGCCAACTTTTAACGGACCATTTAGAAAAAGAAACAGCCAGCGAGTAATGGAGGTTACTGCCCACTTTGACAACCTCTGTCCACCCTTCATGAAACAGCATCACTCACCAGACAAAAACCGAAAGGCCATGGCGAACTGTGGCTGCAGCAGAGAGCGGTGGAATGCGATCTCTTTTCTCTTACTCTCTCTGATCTTCCTTCTGTTTTGTCATTATTTGTGTATTTGTGCCCCTACAACTATGTTCTTATGATGTGTTGTGTGCTAGTGTAGATGTGAAACGATGAAAACCCATACATGCCAACCTTGAAACTTTATGATTTCGTAGTATTGCTGACATGACTGAAAAAAAAAAAAACGGTTGAGGTTCAGCGTTCATCTGTAACGCTGGATAAAGGGTTATTCCAATCAGGTAGAAAGAATTTTGCTGTATCACAATTTTTTTACTGTAATAATGACCCATGTGGGGTAAAATCCTGTGATTTATTTTATTTTTTATTCTTTTTTTGGCTTCTAATTTGTCAGTAAAGCCACATAACAGAACTTTACCTTATGATTACTTGCCCAGATTAAAATTAGGACAATTAGTTATTGGCTTTTTTTTTTTTTTTTTTTACTTTCTCCATCTAACATCTGTGCAAAAATTATATAACTCTTCTAGTGTCAAAATTGGCCCTTTTTAACCATTCTTAATCTTTAAACGTATCACTCTTGCTTGTTGGAGGGCAGACAATCGTCATCATGTGAGTGTGAAATGGGACATTTTTATCAGTTTCCACACACTTTTTTTTTCCTTTATTCATTTTGCTCCACAAGTCTAACTGATATACTCCCTCTTGTGGCTGATTTTGGTGAACACATTCCCTGTTTGACCTCATGAACTCAGCTGTCCTCATTCACGTGGTAGATTAAATATATATATCGGGTTCTTATTACTTTTTTAACCTAGAGTTGACTCA

Function

symbol description
cbx5 Predicted to be located in nucleus. Is expressed in somite. Orthologous to human CBX5 (chromobox 5).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11587 CBX5, HP1A; chromobox protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02166796_02171151.mRNA True 1643 mRNA 0.42 4 2166796 2172179

Neighbor

gene id symbol gene type direction distance location
CI01000001_02152125_02157921 NFE2 coding upstream 8173 2151932 ~ 2158623 (+)
CI01000001_02106280_02114656 ZNF740B, ZNF740 coding upstream 51545 2105979 ~ 2115251 (+)
CI01000001_02090800_02101722 CSAD coding upstream 64930 2090687 ~ 2101866 (+)
CI01000001_02084996_02088477 NA coding upstream 77464 2084996 ~ 2089332 (+)
CI01000001_02009224_02019961 SPRYD3 coding upstream 146605 2007094 ~ 2020191 (+)
CI01000001_02393859_02406849 CALCOCO1A coding downstream 221680 2393859 ~ 2407235 (+)
CI01000001_02492831_02495337 NA coding downstream 320252 2492431 ~ 2495411 (+)
CI01000001_02505727_02507172 MFSD5 coding downstream 333216 2505395 ~ 2507357 (+)
CI01000001_02526729_02544932 JPH2 coding downstream 354550 2526729 ~ 2544986 (+)
CI01000001_02567315_02569427 TUBA1C, TUBA1B, TUBA1A, TUBA1A.S, TUBA1D coding downstream 394496 2566675 ~ 2569605 (+)
G13815 NA non-coding upstream 16601 2149878 ~ 2150195 (+)
G13813 NA non-coding upstream 19040 2147201 ~ 2147756 (+)
G13812 NA non-coding upstream 22928 2143657 ~ 2143868 (+)
G13735 NA non-coding upstream 63328 2102157 ~ 2103468 (+)
G13822 NA non-coding downstream 12239 2184418 ~ 2196173 (+)
G13887 NA non-coding downstream 85309 2257488 ~ 2257865 (+)
G13898 NA non-coding downstream 118625 2290804 ~ 2297211 (+)
G13922 NA non-coding downstream 195800 2367979 ~ 2368211 (+)
G13924 NA non-coding downstream 208713 2380892 ~ 2381140 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 495792 1667762 ~ 1671167 (+)
G13051 NA other upstream 1121644 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1674739 483853 ~ 488825 (+)
G12614 NA other upstream 1855855 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 1444069 3618075 ~ 3621451 (+)
G15794 NA other downstream 2889039 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3114570 5279837 ~ 5287698 (+)
G15995 NA other downstream 3539706 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 5360393 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location