eif3m (eif3m,LOC107602127,LOC107671036)


Basic Information

Item Value
gene id eif3m
gene name eif3m,LOC107602127,LOC107671036
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13362547 ~ 13366713 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216713.1
GGCAAATTTACAAATTCTCTTCCGGCCTGTGATCCTGGGCTGCGAGCGTGGATTCTCATCTGtgctcttaaaatatttaataatatgagTGTCCCGGCATTTATTGATATAACGGAGGAGGATCAGGCGTCAGAGCTCCGGGCCTATCTGAAATCTAAAGGAGCTGAGATCTCTGAAGAGAACTCGGAAGGAGGTCTGCACGTCGATCTGGCGCAGATCATTGAGGCCTCTGACGTCTGCCTCAGAGATGACGACAAAGACGTGGAGAGCGTGATGAACAGCATCGTGTCCCTGTTGCTGATTCTGGAGACGGAGAAGCAGGAGGCCCTCATCGAGAGTCTGTGTGAGAAGCTGGTGAAGTTTCGTGAGGGCGAGCGGCCCTCGCTCAGGATGCAGCTCTTGAGCAATCTGTTCCATGGTATGGATGAGAACACGCCGGTGAGGTACACTGTGTACTGCAGTCTGATTAAAGTGGCCGCCACCTGCAATGCCATTGCGTTCATACCTACAGACCTGGACCAGGTGCGCAAGTGGATCACAGACTGGAACCTGAATACAGAGAAGAAACACACTCTGCTCCGTCTGGTGTATGAAGCGCTGGTCGACTGCAAAAAGAGTGAAGCTGCAGCTAAAGTGATGGTGGAGTTGCTGGGCAGTTACACCGAGGACAATGCTTCACAAGCCCGAGTGGATGCGCACAGGTGCATCGTCCGTGCCCTGAACGACCCAAACACCTATCTGTTCGACCATCTCCTGGCCTTGAAACCAGTGCGCTTCCTGGAGGGAGAGCTCATCCACGatCTCCTGACTATCTTCGTCAGTGCAAAGCTTGCTGCTTATGTGAAGTTTTACCAGAGCAACAAAGACTTCATTGAGTCTCTCGGTTTGTCTCATGAGCAGAACATGGCAAAAATGAGGCTGTTGACGTTCATGGGCATGGCGGTGGAGATGAAGGAGATCTTGTTTGACACCATGCAGCAGGAGCTACAGATCGGTGCTGAAGACGTGGAGGCCTTCGTCATTGACGCTGTTCGGACCAAAATGGTCTATTGCAAGATCGACCAGACACAACGGAAGGTCGTGGTGAGCCACAGCACACACCGCACCTTTGGCAAGCAGCAGTGGCAGCAGCTGTATGACACACTGTGCTCCTGGAAACAGAATCTGGCTACCGTGAAGAGCAGCCTTCAGACGCTCTCTCCCACTGCCTGACACGGCTGCTTCTGTTTTTACACTCGTCCAATAAAACACCCGTGAAGACCA

Function

symbol description
eif3m Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Is expressed in exocrine pancreas and gut. Orthologous to human EIF3M (eukaryotic translation initiation factor 3 subunit M).

NR:

description
Probable COP9 signalosome complex subunit 7

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15030 EIF3M; translation initiation factor 3 subunit M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216713.1 True 1263 mRNA 0.52 11 13362547 13366713

Neighbor

gene id symbol gene type direction distance location
kifc3 kifc3,LOC107670565,LOC107670616 coding upstream 25105 13302536 ~ 13337442 (+)
cngb1a cngb1a,LOC107717637 coding upstream 62909 13273197 ~ 13299638 (+)
large2 gyltl1b,LOC107670633,LOC107670096,LOC107554994,LOC107602128,LOC107758043 coding upstream 197353 13051968 ~ 13165194 (+)
arfgap2 arfgap2 coding upstream 361687 12990848 ~ 13000860 (+)
fam118b fam118b,LOC107669270,LOC107565084 coding upstream 383913 12968956 ~ 12978634 (+)
prrg4 prrg4,LOC107670609,LOC107671204,LOC107758038,LOC107717603 coding downstream 4989 13371702 ~ 13376207 (+)
qser1 LOC107575561,LOC107758064,LOC107602126,LOC107671129,LOC107670638 coding downstream 10493 13377206 ~ 13391679 (+)
depdc7a LOC107576633,LOC107758055,LOC107670610,LOC107717627,LOC107673282 coding downstream 29498 13396211 ~ 13406293 (+)
LOC122362741 LOC107758035,LOC107576241,LOC107672562 coding downstream 57144 13423857 ~ 13426248 (+)
abcc5 abcc5,LOC107670605,LOC107671530 coding downstream 65182 13431895 ~ 13458567 (+)
G125881 wt1b,LOC107717629,LOC107670615,LOC107758040,LOC107602104,LOC107575657,LOC107673204 non-coding upstream 10817 13350491 ~ 13351730 (+)
G125879 NA non-coding upstream 15610 13346678 ~ 13346937 (+)
G125877 NA non-coding upstream 23481 13337754 ~ 13339066 (+)
G125855 si:ch211-71n6.4,LOC107758068,LOC107753016,LOC107670624,LOC107578946,LOC105902995 non-coding upstream 349647 13009874 ~ 13012900 (+)
G125784 NA non-coding upstream 721111 12641192 ~ 12641436 (+)
G125886 NA non-coding downstream 703 13367416 ~ 13369511 (+)
G125887 NA non-coding downstream 3000 13369713 ~ 13370781 (+)
G126098 NA non-coding downstream 176540 13543253 ~ 13543775 (+)
LOC122323141 NA non-coding downstream 245346 13612059 ~ 13693855 (+)
G126128 NA non-coding downstream 276685 13643398 ~ 13644760 (+)
LOC122362547 LOC107672480,LOC107758042,LOC107554971 other upstream 140399 13216484 ~ 13222148 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other upstream 406602 12946841 ~ 12955945 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other upstream 437079 12917226 ~ 12925468 (+)
G125836 NA other upstream 477935 12880588 ~ 12884612 (+)
G125830 NA other upstream 539766 12809450 ~ 12822781 (+)
rpl35a rpl35a,LOC107673417,LOC107670602 other downstream 60331 13427044 ~ 13430765 (+)
daw1 daw1,LOC107727686,LOC107576612,LOC107717604 other downstream 303576 13670289 ~ 13706114 (+)
G126132 foxa3,LOC107717614,LOC107692498,LOC107602118,LOC107727696,LOC107575381,LOC107670595 other downstream 312332 13679045 ~ 13682571 (+)
lbhl lbhl other downstream 495158 13861871 ~ 13869332 (+)
G126175 NA other downstream 542851 13909564 ~ 13912800 (+)

Expression


Co-expression Network